miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 6109 0.82 0.040552
Target:  5'- cGCCGAGGCCGAg---GCCGCCGCuaCGCg -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGUGGCG--GCG- -5'
23220 5' -61.6 NC_005259.1 + 58692 0.83 0.036339
Target:  5'- -gCGGGGUCGG-CUCGUCGCCGCCGCc -3'
miRNA:   3'- cgGCUCCGGCUaGAGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 27477 0.83 0.032557
Target:  5'- gGCCGGGGUCGGUgUgGCCACCGCCccacGCg -3'
miRNA:   3'- -CGGCUCCGGCUAgAgCGGUGGCGG----CG- -5'
23220 5' -61.6 NC_005259.1 + 6937 0.84 0.029162
Target:  5'- cGCCuuGAGGCCGAgCUCGCCGCCGaCgGCa -3'
miRNA:   3'- -CGG--CUCCGGCUaGAGCGGUGGC-GgCG- -5'
23220 5' -61.6 NC_005259.1 + 1850 0.94 0.00493
Target:  5'- cGCCGAGGCCGAgaaaGCCGCCGCCGCg -3'
miRNA:   3'- -CGGCUCCGGCUagagCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 13432 0.76 0.112914
Target:  5'- cGCCGGGGCCGcgCUaggCGUgACCGUCGg -3'
miRNA:   3'- -CGGCUCCGGCuaGA---GCGgUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 45013 0.76 0.112914
Target:  5'- cGCCGGGGCCGcgC-CGCCcugcuucaugaGCUGCuCGCg -3'
miRNA:   3'- -CGGCUCCGGCuaGaGCGG-----------UGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 63182 0.73 0.179803
Target:  5'- cGCCGAGGugaucgcaccCCGGUCgugCGCCucgACCGCCu- -3'
miRNA:   3'- -CGGCUCC----------GGCUAGa--GCGG---UGGCGGcg -5'
23220 5' -61.6 NC_005259.1 + 19447 0.73 0.179803
Target:  5'- cCCGAGGCUGucaUCGagACCGCCGUg -3'
miRNA:   3'- cGGCUCCGGCuagAGCggUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 46909 0.73 0.172658
Target:  5'- cGCCGAGcaguccgcgugcgccGCCGAgCUugcccgccgCGCCGCCGaCCGCg -3'
miRNA:   3'- -CGGCUC---------------CGGCUaGA---------GCGGUGGC-GGCG- -5'
23220 5' -61.6 NC_005259.1 + 24862 0.73 0.166615
Target:  5'- cGCCGAGGCCcgcCUCGCUcugACCGCUa- -3'
miRNA:   3'- -CGGCUCCGGcuaGAGCGG---UGGCGGcg -5'
23220 5' -61.6 NC_005259.1 + 25902 0.74 0.162416
Target:  5'- uCCGAggauGGCCGccugaGCCGCCGCCGCc -3'
miRNA:   3'- cGGCU----CCGGCuagagCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37018 0.74 0.153906
Target:  5'- cGCCGGGGaacaugacaaugUCGAUCUuggugccCGCCACCGCCcacgGCg -3'
miRNA:   3'- -CGGCUCC------------GGCUAGA-------GCGGUGGCGG----CG- -5'
23220 5' -61.6 NC_005259.1 + 20114 0.74 0.150384
Target:  5'- cGCCGucucaAGGCCGcaCUgGCUGCCGUCGCg -3'
miRNA:   3'- -CGGC-----UCCGGCuaGAgCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 24754 0.74 0.146557
Target:  5'- uGCCGAGGCgcucauCGAaucCUCGaCCAcCCGCCGUa -3'
miRNA:   3'- -CGGCUCCG------GCUa--GAGC-GGU-GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 18409 0.74 0.146557
Target:  5'- cGCCGAGcCCGcgCcCGCCACCuaCGCg -3'
miRNA:   3'- -CGGCUCcGGCuaGaGCGGUGGcgGCG- -5'
23220 5' -61.6 NC_005259.1 + 35479 0.75 0.134549
Target:  5'- cGCCcgguAGGCCGAacgaUCcuggguuggccccgUUGCCGCCGCCGCc -3'
miRNA:   3'- -CGGc---UCCGGCU----AG--------------AGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 6425 0.75 0.132122
Target:  5'- cCCGAccucGCCGAUgUCGgCACCGUCGCg -3'
miRNA:   3'- cGGCUc---CGGCUAgAGCgGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 11439 0.75 0.132122
Target:  5'- uGCUuGGGCCG--CUCGCUGCCGCCGg -3'
miRNA:   3'- -CGGcUCCGGCuaGAGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 22682 0.75 0.125406
Target:  5'- aCCGccGCCGAUUUCcCCGCCGUCGCc -3'
miRNA:   3'- cGGCucCGGCUAGAGcGGUGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.