miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 5532 0.72 0.208974
Target:  5'- aGCUGuGGCUGcUCUCGCCcgagGCCGCg -3'
miRNA:   3'- -CGGCuCCGGCuAGAGCGGugg-CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 46664 0.72 0.213686
Target:  5'- gGuuGAGGUucucggCGAgCUCggccugaGCCGCCGCCGCg -3'
miRNA:   3'- -CggCUCCG------GCUaGAG-------CGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 60809 0.72 0.214746
Target:  5'- cCCGAGGCCGGaaaucgucggcgaugCUgGCCACCaUCGCg -3'
miRNA:   3'- cGGCUCCGGCUa--------------GAgCGGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37612 0.72 0.216343
Target:  5'- gGCCGAGcucGCUGAUggggaugaugugCUgcccgaugaccgcacCGCCGCCGCCGCc -3'
miRNA:   3'- -CGGCUC---CGGCUA------------GA---------------GCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 43296 0.72 0.216343
Target:  5'- cGCCGAcgcgcccgccugaauGGCUGcgUUgGCCACCGCCuugGCg -3'
miRNA:   3'- -CGGCU---------------CCGGCuaGAgCGGUGGCGG---CG- -5'
23220 5' -61.6 NC_005259.1 + 51492 0.72 0.219569
Target:  5'- cGCCGGGGauaGGUCgaCGCCGCCGaucucgaCGCg -3'
miRNA:   3'- -CGGCUCCgg-CUAGa-GCGGUGGCg------GCG- -5'
23220 5' -61.6 NC_005259.1 + 27507 0.72 0.219569
Target:  5'- cGCCGAGGUCGAcgugUC-CGCacaCGCCGUc -3'
miRNA:   3'- -CGGCUCCGGCU----AGaGCGgugGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 25682 0.72 0.219569
Target:  5'- aGUCGAGGCCGGUgUC-CCACC-CCa- -3'
miRNA:   3'- -CGGCUCCGGCUAgAGcGGUGGcGGcg -5'
23220 5' -61.6 NC_005259.1 + 8753 0.72 0.219569
Target:  5'- cGUCGAGGUCGAggccCUUgGCCAgCGCgGCg -3'
miRNA:   3'- -CGGCUCCGGCUa---GAG-CGGUgGCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 1357 0.72 0.219569
Target:  5'- uGCCuacuGGGCCG--CUCGCCgcGCCGcCCGCg -3'
miRNA:   3'- -CGGc---UCCGGCuaGAGCGG--UGGC-GGCG- -5'
23220 5' -61.6 NC_005259.1 + 7640 0.71 0.225037
Target:  5'- aCCGucGCCGAgUUCGaCCGCCGUCGUc -3'
miRNA:   3'- cGGCucCGGCUaGAGC-GGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 26095 0.71 0.225037
Target:  5'- cGCCGAGaagacccCCGAgcagacCGCCGCCGCCGg -3'
miRNA:   3'- -CGGCUCc------GGCUaga---GCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 35624 0.71 0.225037
Target:  5'- cGUCGAguaguucgGGCCGc---CGCCGCUGCCGCu -3'
miRNA:   3'- -CGGCU--------CCGGCuagaGCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 45468 0.71 0.23062
Target:  5'- uGCCGAacgGGCCGAgcuUCUgGCCGCUgguggccuugGUCGCu -3'
miRNA:   3'- -CGGCU---CCGGCU---AGAgCGGUGG----------CGGCG- -5'
23220 5' -61.6 NC_005259.1 + 60200 0.71 0.23062
Target:  5'- aCCGGGccacgaucucGCCGAUCUCGUCGgCGCUGa -3'
miRNA:   3'- cGGCUC----------CGGCUAGAGCGGUgGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 44976 0.71 0.23062
Target:  5'- uGCCGAgGGCCGGUgCgacUGCCgaggcACCGCCGa -3'
miRNA:   3'- -CGGCU-CCGGCUA-Ga--GCGG-----UGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 43829 0.71 0.23062
Target:  5'- cGCCGgacacaGGGCCGccgCUCGCCauGCCGagCGCa -3'
miRNA:   3'- -CGGC------UCCGGCua-GAGCGG--UGGCg-GCG- -5'
23220 5' -61.6 NC_005259.1 + 29275 0.71 0.23062
Target:  5'- cGCCGuGGaCGAgaUCGCCAacCCGUCGCa -3'
miRNA:   3'- -CGGCuCCgGCUagAGCGGU--GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 9998 0.71 0.23062
Target:  5'- aGCCGGGGacugauccgcgUCGAUCUCGCCcuuACCGaCCa- -3'
miRNA:   3'- -CGGCUCC-----------GGCUAGAGCGG---UGGC-GGcg -5'
23220 5' -61.6 NC_005259.1 + 48521 0.71 0.23062
Target:  5'- uGCCGcacuGCCGAcuUCUCGgCGCUGUCGCc -3'
miRNA:   3'- -CGGCuc--CGGCU--AGAGCgGUGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.