miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23224 3' -59.5 NC_005259.1 + 25906 0.66 0.512927
Target:  5'- -aGGaugGCCGCcUGAGCCGC-CgCCGCc -3'
miRNA:   3'- uaUCg--CGGCGuACUCGGCGuG-GGUGu -5'
23224 3' -59.5 NC_005259.1 + 38948 0.66 0.512927
Target:  5'- -cGGUGCCGCu---GCCGCcgagaGCCUGCAc -3'
miRNA:   3'- uaUCGCGGCGuacuCGGCG-----UGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 4641 0.66 0.512927
Target:  5'- gAUAGUGcCCGCGca--CCGCGCCUACGg -3'
miRNA:   3'- -UAUCGC-GGCGUacucGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 44687 0.66 0.502729
Target:  5'- cGUGGC-CCGCAuaUGGcCCGCGuCCCACc -3'
miRNA:   3'- -UAUCGcGGCGU--ACUcGGCGU-GGGUGu -5'
23224 3' -59.5 NC_005259.1 + 8775 0.66 0.502729
Target:  5'- -cAGCGCgGCGgugaUGAGCUcgGCCCGCu -3'
miRNA:   3'- uaUCGCGgCGU----ACUCGGcgUGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 18791 0.66 0.502729
Target:  5'- -aAGCgGUgGCAggGAcGCCGCACCCuCAa -3'
miRNA:   3'- uaUCG-CGgCGUa-CU-CGGCGUGGGuGU- -5'
23224 3' -59.5 NC_005259.1 + 1354 0.66 0.502729
Target:  5'- -cGGUGCCuacUGGGCCGCucgccgcgccGCCCGCGa -3'
miRNA:   3'- uaUCGCGGcguACUCGGCG----------UGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 50150 0.66 0.502729
Target:  5'- uUGGCGauccggCGCGUGAGCgaGCgguggaauGCCCGCAg -3'
miRNA:   3'- uAUCGCg-----GCGUACUCGg-CG--------UGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 38746 0.66 0.49262
Target:  5'- gGUGGCccGCCGCAggccggUGAGCUGCGCgaUCAUg -3'
miRNA:   3'- -UAUCG--CGGCGU------ACUCGGCGUG--GGUGu -5'
23224 3' -59.5 NC_005259.1 + 31799 0.66 0.489605
Target:  5'- --cGCGUCGuCAUcGAGCucgaccgaccccacCGCGCCCGCGu -3'
miRNA:   3'- uauCGCGGC-GUA-CUCG--------------GCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 45344 0.66 0.482605
Target:  5'- --uGCGCCGCcUGGGCCGcCGCgUAg- -3'
miRNA:   3'- uauCGCGGCGuACUCGGC-GUGgGUgu -5'
23224 3' -59.5 NC_005259.1 + 14874 0.66 0.482605
Target:  5'- --cGCGCUGCccGAGCCGcCGCCg--- -3'
miRNA:   3'- uauCGCGGCGuaCUCGGC-GUGGgugu -5'
23224 3' -59.5 NC_005259.1 + 34688 0.66 0.47269
Target:  5'- uUGGCGCUGCGgaUGAuGCCGaccauCugCCGCGc -3'
miRNA:   3'- uAUCGCGGCGU--ACU-CGGC-----GugGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 26045 0.66 0.47269
Target:  5'- -cAGCGCCGCcgGGuuggccauGCCGcCGCCgaGCAg -3'
miRNA:   3'- uaUCGCGGCGuaCU--------CGGC-GUGGg-UGU- -5'
23224 3' -59.5 NC_005259.1 + 27444 0.67 0.462878
Target:  5'- --cGCGUCGCAUGAGCuCGU-CgCGCGg -3'
miRNA:   3'- uauCGCGGCGUACUCG-GCGuGgGUGU- -5'
23224 3' -59.5 NC_005259.1 + 24813 0.67 0.462878
Target:  5'- -aGGUGCCccgGCAc--GCCGUGCCCGCAc -3'
miRNA:   3'- uaUCGCGG---CGUacuCGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 64689 0.67 0.453175
Target:  5'- --cGCGCCGCc-GAGCgaUACCCACAu -3'
miRNA:   3'- uauCGCGGCGuaCUCGgcGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 52191 0.67 0.44263
Target:  5'- --cGCGCCGacaacgcacggcuCAUGGGCaccgcguucCGCGCCCGCu -3'
miRNA:   3'- uauCGCGGC-------------GUACUCG---------GCGUGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 28955 0.67 0.44263
Target:  5'- --uGCGCCGCAucgccgaggucggUGccgaGGCCGCgagcGCCCGCu -3'
miRNA:   3'- uauCGCGGCGU-------------AC----UCGGCG----UGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 46902 0.67 0.441678
Target:  5'- -gAGCGCCcgccgagcaguccGCGUGcGCCGCcgagcuuGCCCGCc -3'
miRNA:   3'- uaUCGCGG-------------CGUACuCGGCG-------UGGGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.