miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23224 3' -59.5 NC_005259.1 + 66052 0.7 0.278717
Target:  5'- cGUAGaCGCCGcCGUGGGCCugcuGUAgCCACAc -3'
miRNA:   3'- -UAUC-GCGGC-GUACUCGG----CGUgGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 65430 0.67 0.424748
Target:  5'- -aAGCGaUgGCcUGAGCuCGCACCUGCGa -3'
miRNA:   3'- uaUCGC-GgCGuACUCG-GCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 64689 0.67 0.453175
Target:  5'- --cGCGCCGCc-GAGCgaUACCCACAu -3'
miRNA:   3'- uauCGCGGCGuaCUCGgcGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 63176 0.69 0.346258
Target:  5'- -cAGCGCCGCcgagGUGA-UCGCACCC-CGg -3'
miRNA:   3'- uaUCGCGGCG----UACUcGGCGUGGGuGU- -5'
23224 3' -59.5 NC_005259.1 + 62799 0.74 0.162091
Target:  5'- -gAGCGCCGCGucauucaccuUGAagcGCCGCuuGCCCGCGa -3'
miRNA:   3'- uaUCGCGGCGU----------ACU---CGGCG--UGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 56906 0.71 0.233766
Target:  5'- cGUGGcCGCCGCAgcAGgCGUGCCCGCGu -3'
miRNA:   3'- -UAUC-GCGGCGUacUCgGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 52191 0.67 0.44263
Target:  5'- --cGCGCCGacaacgcacggcuCAUGGGCaccgcguucCGCGCCCGCu -3'
miRNA:   3'- uauCGCGGC-------------GUACUCG---------GCGUGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 50913 1.06 0.000665
Target:  5'- gAUAGCGCCGCAUGAGCCGCACCCACAc -3'
miRNA:   3'- -UAUCGCGGCGUACUCGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 50150 0.66 0.502729
Target:  5'- uUGGCGauccggCGCGUGAGCgaGCgguggaauGCCCGCAg -3'
miRNA:   3'- uAUCGCg-----GCGUACUCGg-CG--------UGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 49881 0.68 0.361936
Target:  5'- --uGCGCCgaguugcGCAUGAagGUCGUGCCCGCGu -3'
miRNA:   3'- uauCGCGG-------CGUACU--CGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 48065 0.67 0.434106
Target:  5'- gGUAGCGCC------GCCGCGCCCugAg -3'
miRNA:   3'- -UAUCGCGGcguacuCGGCGUGGGugU- -5'
23224 3' -59.5 NC_005259.1 + 47995 0.68 0.406399
Target:  5'- -cAGCGCaagaccggcuUGUGUGAGCugcugcacCGCGCCCACGa -3'
miRNA:   3'- uaUCGCG----------GCGUACUCG--------GCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 47955 0.69 0.354448
Target:  5'- -cGGUGCCG-AUGGccGCCGCgccGCCCGCGa -3'
miRNA:   3'- uaUCGCGGCgUACU--CGGCG---UGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 46902 0.67 0.441678
Target:  5'- -gAGCGCCcgccgagcaguccGCGUGcGCCGCcgagcuuGCCCGCc -3'
miRNA:   3'- uaUCGCGG-------------CGUACuCGGCG-------UGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 46770 0.73 0.185089
Target:  5'- --uGCGCCGac--AGCCGCGCCCGCc -3'
miRNA:   3'- uauCGCGGCguacUCGGCGUGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 45344 0.66 0.482605
Target:  5'- --uGCGCCGCcUGGGCCGcCGCgUAg- -3'
miRNA:   3'- uauCGCGGCGuACUCGGC-GUGgGUgu -5'
23224 3' -59.5 NC_005259.1 + 44687 0.66 0.502729
Target:  5'- cGUGGC-CCGCAuaUGGcCCGCGuCCCACc -3'
miRNA:   3'- -UAUCGcGGCGU--ACUcGGCGU-GGGUGu -5'
23224 3' -59.5 NC_005259.1 + 44330 0.68 0.397413
Target:  5'- -gAGCGCCGCGU-AGCUGCcgggcuuguUCCACGg -3'
miRNA:   3'- uaUCGCGGCGUAcUCGGCGu--------GGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 39853 0.69 0.354448
Target:  5'- -aGGaUGCCGgugagcuucuCAUaGAGCUGCGCCCACAc -3'
miRNA:   3'- uaUC-GCGGC----------GUA-CUCGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 38948 0.66 0.512927
Target:  5'- -cGGUGCCGCu---GCCGCcgagaGCCUGCAc -3'
miRNA:   3'- uaUCGCGGCGuacuCGGCG-----UGGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.