Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23224 | 3' | -59.5 | NC_005259.1 | + | 38799 | 0.68 | 0.397413 |
Target: 5'- --cGCuGCCG-AUGAGaucgcCCGCGCCCGCGa -3' miRNA: 3'- uauCG-CGGCgUACUC-----GGCGUGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 7906 | 0.68 | 0.396522 |
Target: 5'- gAUAGCgcaccaccuuGCCGCccuuggucucGUGGGCCuucuugcGCGCCCACGg -3' miRNA: 3'- -UAUCG----------CGGCG----------UACUCGG-------CGUGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 19869 | 0.68 | 0.388556 |
Target: 5'- --cGCGcCCGCcgGGaucgccgacGCCGCGCCCAa- -3' miRNA: 3'- uauCGC-GGCGuaCU---------CGGCGUGGGUgu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 49881 | 0.68 | 0.361936 |
Target: 5'- --uGCGCCgaguugcGCAUGAagGUCGUGCCCGCGu -3' miRNA: 3'- uauCGCGG-------CGUACU--CGGCGUGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 27444 | 0.67 | 0.462878 |
Target: 5'- --cGCGUCGCAUGAGCuCGU-CgCGCGg -3' miRNA: 3'- uauCGCGGCGUACUCG-GCGuGgGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 24813 | 0.67 | 0.462878 |
Target: 5'- -aGGUGCCccgGCAc--GCCGUGCCCGCAc -3' miRNA: 3'- uaUCGCGG---CGUacuCGGCGUGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 64689 | 0.67 | 0.453175 |
Target: 5'- --cGCGCCGCc-GAGCgaUACCCACAu -3' miRNA: 3'- uauCGCGGCGuaCUCGgcGUGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 52191 | 0.67 | 0.44263 |
Target: 5'- --cGCGCCGacaacgcacggcuCAUGGGCaccgcguucCGCGCCCGCu -3' miRNA: 3'- uauCGCGGC-------------GUACUCG---------GCGUGGGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 28955 | 0.67 | 0.44263 |
Target: 5'- --uGCGCCGCAucgccgaggucggUGccgaGGCCGCgagcGCCCGCu -3' miRNA: 3'- uauCGCGGCGU-------------AC----UCGGCG----UGGGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 46902 | 0.67 | 0.441678 |
Target: 5'- -gAGCGCCcgccgagcaguccGCGUGcGCCGCcgagcuuGCCCGCc -3' miRNA: 3'- uaUCGCGG-------------CGUACuCGGCG-------UGGGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 48065 | 0.67 | 0.434106 |
Target: 5'- gGUAGCGCC------GCCGCGCCCugAg -3' miRNA: 3'- -UAUCGCGGcguacuCGGCGUGGGugU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 35815 | 0.67 | 0.434106 |
Target: 5'- -cGGUGCCGUAcGAccccgcauaGCCGCcaccGCCCGCGa -3' miRNA: 3'- uaUCGCGGCGUaCU---------CGGCG----UGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 7439 | 0.67 | 0.415512 |
Target: 5'- --cGCGCCGCAUG-GCaGCGCCgAgGa -3' miRNA: 3'- uauCGCGGCGUACuCGgCGUGGgUgU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 15595 | 0.67 | 0.415512 |
Target: 5'- --cGgGCCGCAUGAGCUacgGCAgCCC-CGa -3' miRNA: 3'- uauCgCGGCGUACUCGG---CGU-GGGuGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 5343 | 0.67 | 0.424748 |
Target: 5'- gGUGGUGagauuCGCAUGAGCCG-ACCUAUc -3' miRNA: 3'- -UAUCGCg----GCGUACUCGGCgUGGGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 8566 | 0.67 | 0.424748 |
Target: 5'- --uGCGCCGCAgca-CCGCcaccGCCCACGc -3' miRNA: 3'- uauCGCGGCGUacucGGCG----UGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 65430 | 0.67 | 0.424748 |
Target: 5'- -aAGCGaUgGCcUGAGCuCGCACCUGCGa -3' miRNA: 3'- uaUCGC-GgCGuACUCG-GCGUGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 25906 | 0.66 | 0.512927 |
Target: 5'- -aGGaugGCCGCcUGAGCCGC-CgCCGCc -3' miRNA: 3'- uaUCg--CGGCGuACUCGGCGuG-GGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 34688 | 0.66 | 0.47269 |
Target: 5'- uUGGCGCUGCGgaUGAuGCCGaccauCugCCGCGc -3' miRNA: 3'- uAUCGCGGCGU--ACU-CGGC-----GugGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 14874 | 0.66 | 0.482605 |
Target: 5'- --cGCGCUGCccGAGCCGcCGCCg--- -3' miRNA: 3'- uauCGCGGCGuaCUCGGC-GUGGgugu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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