Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23224 | 3' | -59.5 | NC_005259.1 | + | 25906 | 0.66 | 0.512927 |
Target: 5'- -aGGaugGCCGCcUGAGCCGC-CgCCGCc -3' miRNA: 3'- uaUCg--CGGCGuACUCGGCGuG-GGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 26045 | 0.66 | 0.47269 |
Target: 5'- -cAGCGCCGCcgGGuuggccauGCCGcCGCCgaGCAg -3' miRNA: 3'- uaUCGCGGCGuaCU--------CGGC-GUGGg-UGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 27444 | 0.67 | 0.462878 |
Target: 5'- --cGCGUCGCAUGAGCuCGU-CgCGCGg -3' miRNA: 3'- uauCGCGGCGUACUCG-GCGuGgGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 28955 | 0.67 | 0.44263 |
Target: 5'- --uGCGCCGCAucgccgaggucggUGccgaGGCCGCgagcGCCCGCu -3' miRNA: 3'- uauCGCGGCGU-------------AC----UCGGCG----UGGGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 31245 | 0.72 | 0.200233 |
Target: 5'- -gGGCGCgGCG-GuGCCGC-CCCACAc -3' miRNA: 3'- uaUCGCGgCGUaCuCGGCGuGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 31799 | 0.66 | 0.489605 |
Target: 5'- --cGCGUCGuCAUcGAGCucgaccgaccccacCGCGCCCGCGu -3' miRNA: 3'- uauCGCGGC-GUA-CUCG--------------GCGUGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 34688 | 0.66 | 0.47269 |
Target: 5'- uUGGCGCUGCGgaUGAuGCCGaccauCugCCGCGc -3' miRNA: 3'- uAUCGCGGCGU--ACU-CGGC-----GugGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 35815 | 0.67 | 0.434106 |
Target: 5'- -cGGUGCCGUAcGAccccgcauaGCCGCcaccGCCCGCGa -3' miRNA: 3'- uaUCGCGGCGUaCU---------CGGCG----UGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 36717 | 0.71 | 0.233766 |
Target: 5'- --cGUGCCGCucgacccGCCGCGCCCGCc -3' miRNA: 3'- uauCGCGGCGuacu---CGGCGUGGGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 38746 | 0.66 | 0.49262 |
Target: 5'- gGUGGCccGCCGCAggccggUGAGCUGCGCgaUCAUg -3' miRNA: 3'- -UAUCG--CGGCGU------ACUCGGCGUG--GGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 38799 | 0.68 | 0.397413 |
Target: 5'- --cGCuGCCG-AUGAGaucgcCCGCGCCCGCGa -3' miRNA: 3'- uauCG-CGGCgUACUC-----GGCGUGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 38948 | 0.66 | 0.512927 |
Target: 5'- -cGGUGCCGCu---GCCGCcgagaGCCUGCAc -3' miRNA: 3'- uaUCGCGGCGuacuCGGCG-----UGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 39853 | 0.69 | 0.354448 |
Target: 5'- -aGGaUGCCGgugagcuucuCAUaGAGCUGCGCCCACAc -3' miRNA: 3'- uaUC-GCGGC----------GUA-CUCGGCGUGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 44330 | 0.68 | 0.397413 |
Target: 5'- -gAGCGCCGCGU-AGCUGCcgggcuuguUCCACGg -3' miRNA: 3'- uaUCGCGGCGUAcUCGGCGu--------GGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 44687 | 0.66 | 0.502729 |
Target: 5'- cGUGGC-CCGCAuaUGGcCCGCGuCCCACc -3' miRNA: 3'- -UAUCGcGGCGU--ACUcGGCGU-GGGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 45344 | 0.66 | 0.482605 |
Target: 5'- --uGCGCCGCcUGGGCCGcCGCgUAg- -3' miRNA: 3'- uauCGCGGCGuACUCGGC-GUGgGUgu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 46770 | 0.73 | 0.185089 |
Target: 5'- --uGCGCCGac--AGCCGCGCCCGCc -3' miRNA: 3'- uauCGCGGCguacUCGGCGUGGGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 46902 | 0.67 | 0.441678 |
Target: 5'- -gAGCGCCcgccgagcaguccGCGUGcGCCGCcgagcuuGCCCGCc -3' miRNA: 3'- uaUCGCGG-------------CGUACuCGGCG-------UGGGUGu -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 47955 | 0.69 | 0.354448 |
Target: 5'- -cGGUGCCG-AUGGccGCCGCgccGCCCGCGa -3' miRNA: 3'- uaUCGCGGCgUACU--CGGCG---UGGGUGU- -5' |
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23224 | 3' | -59.5 | NC_005259.1 | + | 47995 | 0.68 | 0.406399 |
Target: 5'- -cAGCGCaagaccggcuUGUGUGAGCugcugcacCGCGCCCACGa -3' miRNA: 3'- uaUCGCG----------GCGUACUCG--------GCGUGGGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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