miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23224 3' -59.5 NC_005259.1 + 8867 0.72 0.205516
Target:  5'- ---cCGCCGCcu--GCCGCACCCACGc -3'
miRNA:   3'- uaucGCGGCGuacuCGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 8775 0.66 0.502729
Target:  5'- -cAGCGCgGCGgugaUGAGCUcgGCCCGCu -3'
miRNA:   3'- uaUCGCGgCGU----ACUCGGcgUGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 8566 0.67 0.424748
Target:  5'- --uGCGCCGCAgca-CCGCcaccGCCCACGc -3'
miRNA:   3'- uauCGCGGCGUacucGGCG----UGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 7906 0.68 0.396522
Target:  5'- gAUAGCgcaccaccuuGCCGCccuuggucucGUGGGCCuucuugcGCGCCCACGg -3'
miRNA:   3'- -UAUCG----------CGGCG----------UACUCGG-------CGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 7439 0.67 0.415512
Target:  5'- --cGCGCCGCAUG-GCaGCGCCgAgGa -3'
miRNA:   3'- uauCGCGGCGUACuCGgCGUGGgUgU- -5'
23224 3' -59.5 NC_005259.1 + 6463 0.71 0.245951
Target:  5'- -cAGCGUCGCcgGuGCCcuGUACCCGCu -3'
miRNA:   3'- uaUCGCGGCGuaCuCGG--CGUGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 5489 0.76 0.110514
Target:  5'- aAUAGCGCCGagcgagGAucgagcuacgcgcGCCGCGCCCGCAa -3'
miRNA:   3'- -UAUCGCGGCgua---CU-------------CGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 5343 0.67 0.424748
Target:  5'- gGUGGUGagauuCGCAUGAGCCG-ACCUAUc -3'
miRNA:   3'- -UAUCGCg----GCGUACUCGGCgUGGGUGu -5'
23224 3' -59.5 NC_005259.1 + 4641 0.66 0.512927
Target:  5'- gAUAGUGcCCGCGca--CCGCGCCUACGg -3'
miRNA:   3'- -UAUCGC-GGCGUacucGGCGUGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 1562 0.68 0.406399
Target:  5'- -gGGCGgugaCGCuGUGAGCgCGC-CCCACAc -3'
miRNA:   3'- uaUCGCg---GCG-UACUCG-GCGuGGGUGU- -5'
23224 3' -59.5 NC_005259.1 + 1354 0.66 0.502729
Target:  5'- -cGGUGCCuacUGGGCCGCucgccgcgccGCCCGCGa -3'
miRNA:   3'- uaUCGCGGcguACUCGGCG----------UGGGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.