miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23225 5' -61.4 NC_005259.1 + 36230 0.74 0.144016
Target:  5'- aGCACCUUGGCcaGCGCgagCGCCUgCGucGGCa -3'
miRNA:   3'- aCGUGGAGCUG--CGCGa--GCGGA-GC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 55037 0.74 0.140308
Target:  5'- gGCugC-CGAgGUGCUUGCCUCGGugGCa -3'
miRNA:   3'- aCGugGaGCUgCGCGAGCGGAGCC--CG- -5'
23225 5' -61.4 NC_005259.1 + 45733 0.75 0.133152
Target:  5'- cGCACCacCGAggcCGCGCacCGCCUCGGGg -3'
miRNA:   3'- aCGUGGa-GCU---GCGCGa-GCGGAGCCCg -5'
23225 5' -61.4 NC_005259.1 + 14320 0.76 0.113658
Target:  5'- cGC-CCUCGACGcCGC-CGCCcgcgugCGGGCc -3'
miRNA:   3'- aCGuGGAGCUGC-GCGaGCGGa-----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 29830 0.79 0.059161
Target:  5'- aGCGCCUCGGCaugaaauccguuCGCUCGCUgUCGGGCa -3'
miRNA:   3'- aCGUGGAGCUGc-----------GCGAGCGG-AGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 31664 0.71 0.222081
Target:  5'- cUGCuugACCUCGACGgGgUUGCC-CGaGGCa -3'
miRNA:   3'- -ACG---UGGAGCUGCgCgAGCGGaGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 34889 0.71 0.229907
Target:  5'- gGUGCCUCGggcaggacggGC-CGCUCgggcaucacacugcuGCCUCGGGCg -3'
miRNA:   3'- aCGUGGAGC----------UGcGCGAG---------------CGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 51512 0.7 0.26356
Target:  5'- cGCcgAUCUCGACGCGCgUGaCCUCGuGCa -3'
miRNA:   3'- aCG--UGGAGCUGCGCGaGC-GGAGCcCG- -5'
23225 5' -61.4 NC_005259.1 + 34434 0.7 0.26356
Target:  5'- cGCcCCUCGAUGaGCU-GCCgacCGGGCa -3'
miRNA:   3'- aCGuGGAGCUGCgCGAgCGGa--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 41743 0.7 0.25727
Target:  5'- -cCGCCUCGACaCGCUCGaCCUCGcaGCc -3'
miRNA:   3'- acGUGGAGCUGcGCGAGC-GGAGCc-CG- -5'
23225 5' -61.4 NC_005259.1 + 57012 0.7 0.25727
Target:  5'- aGCACCUCaGCGCgGCUCGgCgcggUGGGg -3'
miRNA:   3'- aCGUGGAGcUGCG-CGAGCgGa---GCCCg -5'
23225 5' -61.4 NC_005259.1 + 40349 0.71 0.251103
Target:  5'- cGCGCCUCGAUGaUGaaccgCGCCgaGGGCa -3'
miRNA:   3'- aCGUGGAGCUGC-GCga---GCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 24333 0.71 0.251103
Target:  5'- --gGCCUC-ACGCGCUgGCCUaccgcCGGGUg -3'
miRNA:   3'- acgUGGAGcUGCGCGAgCGGA-----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 58785 0.71 0.245058
Target:  5'- gUGCGCCggUCGAgGCGgugaUUGCCUcggCGGGCu -3'
miRNA:   3'- -ACGUGG--AGCUgCGCg---AGCGGA---GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 61522 0.71 0.245058
Target:  5'- gGUcgACCUCGuCGgGaauuucCUCGUCUCGGGCg -3'
miRNA:   3'- aCG--UGGAGCuGCgC------GAGCGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 37746 0.71 0.244461
Target:  5'- aGCugCUCGaugaccaGCGCGgUgGCCccugCGGGCa -3'
miRNA:   3'- aCGugGAGC-------UGCGCgAgCGGa---GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 65789 0.71 0.239135
Target:  5'- cGCcaugGCCUCGACGCGCUgGUCgaaacgCuGGCc -3'
miRNA:   3'- aCG----UGGAGCUGCGCGAgCGGa-----GcCCG- -5'
23225 5' -61.4 NC_005259.1 + 24266 0.71 0.239135
Target:  5'- gUGCACgcguggCUgGAaGCGCUCGaCCUCGGGa -3'
miRNA:   3'- -ACGUG------GAgCUgCGCGAGC-GGAGCCCg -5'
23225 5' -61.4 NC_005259.1 + 19190 0.71 0.233332
Target:  5'- gUGC-CCUCGACaGCgaGCUCGUggugCGGGCg -3'
miRNA:   3'- -ACGuGGAGCUG-CG--CGAGCGga--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 3852 0.71 0.233332
Target:  5'- cGCACCgUCGACGC-CggucgagCGCCUCGaGCc -3'
miRNA:   3'- aCGUGG-AGCUGCGcGa------GCGGAGCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.