miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23225 5' -61.4 NC_005259.1 + 34377 0.72 0.195965
Target:  5'- cGCguaACCUCGACGCGCaacUGCUgcucgacCGGGCu -3'
miRNA:   3'- aCG---UGGAGCUGCGCGa--GCGGa------GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 34434 0.7 0.26356
Target:  5'- cGCcCCUCGAUGaGCU-GCCgacCGGGCa -3'
miRNA:   3'- aCGuGGAGCUGCgCGAgCGGa--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 34889 0.71 0.229907
Target:  5'- gGUGCCUCGggcaggacggGC-CGCUCgggcaucacacugcuGCCUCGGGCg -3'
miRNA:   3'- aCGUGGAGC----------UGcGCGAG---------------CGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 35249 0.67 0.389857
Target:  5'- cUGCGCaCUCGcguuguuCGCGCcCGCCgcgcCGGGg -3'
miRNA:   3'- -ACGUG-GAGCu------GCGCGaGCGGa---GCCCg -5'
23225 5' -61.4 NC_005259.1 + 36230 0.74 0.144016
Target:  5'- aGCACCUUGGCcaGCGCgagCGCCUgCGucGGCa -3'
miRNA:   3'- aCGUGGAGCUG--CGCGa--GCGGA-GC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 37746 0.71 0.244461
Target:  5'- aGCugCUCGaugaccaGCGCGgUgGCCccugCGGGCa -3'
miRNA:   3'- aCGugGAGC-------UGCGCgAgCGGa---GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 39985 0.68 0.371455
Target:  5'- -cCACCUCGACGgGCugaUCGCCgccgagcaugaGGGUc -3'
miRNA:   3'- acGUGGAGCUGCgCG---AGCGGag---------CCCG- -5'
23225 5' -61.4 NC_005259.1 + 40349 0.71 0.251103
Target:  5'- cGCGCCUCGAUGaUGaaccgCGCCgaGGGCa -3'
miRNA:   3'- aCGUGGAGCUGC-GCga---GCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 41130 0.67 0.415893
Target:  5'- gGUGCCcgCGuCGCGCa-GCCUCaGGCc -3'
miRNA:   3'- aCGUGGa-GCuGCGCGagCGGAGcCCG- -5'
23225 5' -61.4 NC_005259.1 + 41394 0.67 0.433831
Target:  5'- gGUACCcaUGGCGCGC-CGC-UCGGGg -3'
miRNA:   3'- aCGUGGa-GCUGCGCGaGCGgAGCCCg -5'
23225 5' -61.4 NC_005259.1 + 41743 0.7 0.25727
Target:  5'- -cCGCCUCGACaCGCUCGaCCUCGcaGCc -3'
miRNA:   3'- acGUGGAGCUGcGCGAGC-GGAGCc-CG- -5'
23225 5' -61.4 NC_005259.1 + 43287 0.69 0.303938
Target:  5'- aGCGCCcgccgcCGACGCGCcCGCCUgaauGGCu -3'
miRNA:   3'- aCGUGGa-----GCUGCGCGaGCGGAgc--CCG- -5'
23225 5' -61.4 NC_005259.1 + 45602 0.68 0.381419
Target:  5'- aGCACCgacagcucggucUCGAUGC-C-CGCCgggcCGGGCa -3'
miRNA:   3'- aCGUGG------------AGCUGCGcGaGCGGa---GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 45733 0.75 0.133152
Target:  5'- cGCACCacCGAggcCGCGCacCGCCUCGGGg -3'
miRNA:   3'- aCGUGGa-GCU---GCGCGa-GCGGAGCCCg -5'
23225 5' -61.4 NC_005259.1 + 46156 0.7 0.269975
Target:  5'- aGCAUgUCGAauacCGCUUGCCcgcCGGGCg -3'
miRNA:   3'- aCGUGgAGCUgc--GCGAGCGGa--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 46563 0.7 0.289287
Target:  5'- cGCGCCuauggucgcggcgUCGAcCGCGC-CGCC-CGaGGCg -3'
miRNA:   3'- aCGUGG-------------AGCU-GCGCGaGCGGaGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 46769 0.66 0.48055
Target:  5'- cUGCGCCgacaGcCGCGCcCGCC--GGGCc -3'
miRNA:   3'- -ACGUGGag--CuGCGCGaGCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 47912 0.67 0.389857
Target:  5'- aGCGCCUUGAUG-GCgUCGCCga-GGCc -3'
miRNA:   3'- aCGUGGAGCUGCgCG-AGCGGagcCCG- -5'
23225 5' -61.4 NC_005259.1 + 48490 0.73 0.172572
Target:  5'- cUGUuCCUCGACGCGCUUGa---GGGCc -3'
miRNA:   3'- -ACGuGGAGCUGCGCGAGCggagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 50398 0.7 0.28318
Target:  5'- cGCGgCUCGccgaGCGCGCcggUGCCuugaccggcUCGGGCa -3'
miRNA:   3'- aCGUgGAGC----UGCGCGa--GCGG---------AGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.