miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23225 5' -61.4 NC_005259.1 + 16673 0.67 0.389857
Target:  5'- -cCGCCUCGAUGUGgUCGgCgauccUGGGCa -3'
miRNA:   3'- acGUGGAGCUGCGCgAGCgGa----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 17595 0.67 0.433831
Target:  5'- cGCaACCUCGGCGCGa-UGaCgUgGGGCg -3'
miRNA:   3'- aCG-UGGAGCUGCGCgaGC-GgAgCCCG- -5'
23225 5' -61.4 NC_005259.1 + 17740 0.72 0.210242
Target:  5'- gGCugCUCGACGCGauccgugaggcCGCCgcgcgcCGGGCc -3'
miRNA:   3'- aCGugGAGCUGCGCga---------GCGGa-----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 18418 0.68 0.373103
Target:  5'- cGCGCC-CGccaccuACGCGCacgaCGCCUCGuGCa -3'
miRNA:   3'- aCGUGGaGC------UGCGCGa---GCGGAGCcCG- -5'
23225 5' -61.4 NC_005259.1 + 19190 0.71 0.233332
Target:  5'- gUGC-CCUCGACaGCgaGCUCGUggugCGGGCg -3'
miRNA:   3'- -ACGuGGAGCUG-CG--CGAGCGga--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 19624 0.68 0.348905
Target:  5'- cUGCgguucaACCUCauugaGACGCucaccgGCacCGCCUCGGGCa -3'
miRNA:   3'- -ACG------UGGAG-----CUGCG------CGa-GCGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 19851 0.67 0.389857
Target:  5'- cGCGCUcggUGugGCGCUCGCgCccgcCGGGa -3'
miRNA:   3'- aCGUGGa--GCugCGCGAGCG-Ga---GCCCg -5'
23225 5' -61.4 NC_005259.1 + 20246 0.66 0.471005
Target:  5'- cGCACCcugugCGACaCGC-CGCgC-CGGGCc -3'
miRNA:   3'- aCGUGGa----GCUGcGCGaGCG-GaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 24266 0.71 0.239135
Target:  5'- gUGCACgcguggCUgGAaGCGCUCGaCCUCGGGa -3'
miRNA:   3'- -ACGUG------GAgCUgCGCGAGC-GGAGCCCg -5'
23225 5' -61.4 NC_005259.1 + 24333 0.71 0.251103
Target:  5'- --gGCCUC-ACGCGCUgGCCUaccgcCGGGUg -3'
miRNA:   3'- acgUGGAGcUGCGCGAgCGGA-----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 26669 0.68 0.356845
Target:  5'- cGCACC-CGGCGgcaGCcCGCCcaUCGaGGCg -3'
miRNA:   3'- aCGUGGaGCUGCg--CGaGCGG--AGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 27505 0.67 0.398417
Target:  5'- cGCGCCgaggUCGACGUGUccgcacaCGCCgUCGaGGCc -3'
miRNA:   3'- aCGUGG----AGCUGCGCGa------GCGG-AGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 28152 0.69 0.296891
Target:  5'- cUGCccgGCCUCGACGCGCUgC-CCUUGacguaguccgguGGCg -3'
miRNA:   3'- -ACG---UGGAGCUGCGCGA-GcGGAGC------------CCG- -5'
23225 5' -61.4 NC_005259.1 + 29830 0.79 0.059161
Target:  5'- aGCGCCUCGGCaugaaauccguuCGCUCGCUgUCGGGCa -3'
miRNA:   3'- aCGUGGAGCUGc-----------GCGAGCGG-AGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 29916 0.66 0.452209
Target:  5'- cUGCccgagACCaUCGACGCGUggcCGCCaCGcGGCc -3'
miRNA:   3'- -ACG-----UGG-AGCUGCGCGa--GCGGaGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 30149 0.66 0.452209
Target:  5'- gGCAgCUCGAcCGgGC-CGCCUaCaGGCc -3'
miRNA:   3'- aCGUgGAGCU-GCgCGaGCGGA-GcCCG- -5'
23225 5' -61.4 NC_005259.1 + 31664 0.71 0.222081
Target:  5'- cUGCuugACCUCGACGgGgUUGCC-CGaGGCa -3'
miRNA:   3'- -ACG---UGGAGCUGCgCgAGCGGaGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 31787 0.68 0.373103
Target:  5'- cUGCGCCUUGAC-CGCgUCGUCaUCGaGCu -3'
miRNA:   3'- -ACGUGGAGCUGcGCG-AGCGG-AGCcCG- -5'
23225 5' -61.4 NC_005259.1 + 31932 0.7 0.289972
Target:  5'- cGCACUcggggUCGAgGCGgUUaCCUCGGGUg -3'
miRNA:   3'- aCGUGG-----AGCUgCGCgAGcGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 32868 0.68 0.381419
Target:  5'- --gACCUCGACGCGCgCGgugaucgauucaCCggGGGCg -3'
miRNA:   3'- acgUGGAGCUGCGCGaGC------------GGagCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.