miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23225 5' -61.4 NC_005259.1 + 37746 0.71 0.244461
Target:  5'- aGCugCUCGaugaccaGCGCGgUgGCCccugCGGGCa -3'
miRNA:   3'- aCGugGAGC-------UGCGCgAgCGGa---GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 61522 0.71 0.245058
Target:  5'- gGUcgACCUCGuCGgGaauuucCUCGUCUCGGGCg -3'
miRNA:   3'- aCG--UGGAGCuGCgC------GAGCGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 58785 0.71 0.245058
Target:  5'- gUGCGCCggUCGAgGCGgugaUUGCCUcggCGGGCu -3'
miRNA:   3'- -ACGUGG--AGCUgCGCg---AGCGGA---GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 24333 0.71 0.251103
Target:  5'- --gGCCUC-ACGCGCUgGCCUaccgcCGGGUg -3'
miRNA:   3'- acgUGGAGcUGCGCGAgCGGA-----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 40349 0.71 0.251103
Target:  5'- cGCGCCUCGAUGaUGaaccgCGCCgaGGGCa -3'
miRNA:   3'- aCGUGGAGCUGC-GCga---GCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 41743 0.7 0.25727
Target:  5'- -cCGCCUCGACaCGCUCGaCCUCGcaGCc -3'
miRNA:   3'- acGUGGAGCUGcGCGAGC-GGAGCc-CG- -5'
23225 5' -61.4 NC_005259.1 + 57012 0.7 0.25727
Target:  5'- aGCACCUCaGCGCgGCUCGgCgcggUGGGg -3'
miRNA:   3'- aCGUGGAGcUGCG-CGAGCgGa---GCCCg -5'
23225 5' -61.4 NC_005259.1 + 34434 0.7 0.26356
Target:  5'- cGCcCCUCGAUGaGCU-GCCgacCGGGCa -3'
miRNA:   3'- aCGuGGAGCUGCgCGAgCGGa--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 51512 0.7 0.26356
Target:  5'- cGCcgAUCUCGACGCGCgUGaCCUCGuGCa -3'
miRNA:   3'- aCG--UGGAGCUGCGCGaGC-GGAGCcCG- -5'
23225 5' -61.4 NC_005259.1 + 46156 0.7 0.269975
Target:  5'- aGCAUgUCGAauacCGCUUGCCcgcCGGGCg -3'
miRNA:   3'- aCGUGgAGCUgc--GCGAGCGGa--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 50398 0.7 0.28318
Target:  5'- cGCGgCUCGccgaGCGCGCcggUGCCuugaccggcUCGGGCa -3'
miRNA:   3'- aCGUgGAGC----UGCGCGa--GCGG---------AGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 54987 0.7 0.28318
Target:  5'- aGCACCucaUCGAucuUGUGCUCGgCUCGcuuGGCg -3'
miRNA:   3'- aCGUGG---AGCU---GCGCGAGCgGAGC---CCG- -5'
23225 5' -61.4 NC_005259.1 + 46563 0.7 0.289287
Target:  5'- cGCGCCuauggucgcggcgUCGAcCGCGC-CGCC-CGaGGCg -3'
miRNA:   3'- aCGUGG-------------AGCU-GCGCGaGCGGaGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 31932 0.7 0.289972
Target:  5'- cGCACUcggggUCGAgGCGgUUaCCUCGGGUg -3'
miRNA:   3'- aCGUGG-----AGCUgCGCgAGcGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 28152 0.69 0.296891
Target:  5'- cUGCccgGCCUCGACGCGCUgC-CCUUGacguaguccgguGGCg -3'
miRNA:   3'- -ACG---UGGAGCUGCGCGA-GcGGAGC------------CCG- -5'
23225 5' -61.4 NC_005259.1 + 50697 0.69 0.296891
Target:  5'- cGCugCUCGucguCGCGCUUGagcCGGGUg -3'
miRNA:   3'- aCGugGAGCu---GCGCGAGCggaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 61065 0.69 0.303938
Target:  5'- uUGUGCCgggcaUCGGCauagGCGUcgUCgGCCUCGGGCu -3'
miRNA:   3'- -ACGUGG-----AGCUG----CGCG--AG-CGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 43287 0.69 0.303938
Target:  5'- aGCGCCcgccgcCGACGCGCcCGCCUgaauGGCu -3'
miRNA:   3'- aCGUGGa-----GCUGCGCGaGCGGAgc--CCG- -5'
23225 5' -61.4 NC_005259.1 + 60453 0.69 0.311113
Target:  5'- cGaCACCUCGAuucCGaCGCUgGUCUCGuaGGCa -3'
miRNA:   3'- aC-GUGGAGCU---GC-GCGAgCGGAGC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 60144 0.69 0.311113
Target:  5'- cGCgGCCUUGGC-CGC-CGCCUcagcggccucaCGGGCg -3'
miRNA:   3'- aCG-UGGAGCUGcGCGaGCGGA-----------GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.