miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23225 5' -61.4 NC_005259.1 + 57503 0.67 0.389857
Target:  5'- cGuCACCUUGACcgacucaccgcaGCGCUUGCCgacGGCg -3'
miRNA:   3'- aC-GUGGAGCUG------------CGCGAGCGGagcCCG- -5'
23225 5' -61.4 NC_005259.1 + 57012 0.7 0.25727
Target:  5'- aGCACCUCaGCGCgGCUCGgCgcggUGGGg -3'
miRNA:   3'- aCGUGGAGcUGCG-CGAGCgGa---GCCCg -5'
23225 5' -61.4 NC_005259.1 + 56354 0.68 0.348905
Target:  5'- uUGC-CCUCGggcACGCGgUacaGCCgucgCGGGCc -3'
miRNA:   3'- -ACGuGGAGC---UGCGCgAg--CGGa---GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 55037 0.74 0.140308
Target:  5'- gGCugC-CGAgGUGCUUGCCUCGGugGCa -3'
miRNA:   3'- aCGugGaGCUgCGCGAGCGGAGCC--CG- -5'
23225 5' -61.4 NC_005259.1 + 54987 0.7 0.28318
Target:  5'- aGCACCucaUCGAucuUGUGCUCGgCUCGcuuGGCg -3'
miRNA:   3'- aCGUGG---AGCU---GCGCGAGCgGAGC---CCG- -5'
23225 5' -61.4 NC_005259.1 + 54207 0.68 0.381419
Target:  5'- gGC-CCUUGACGgGCUgGauaC-CGGGCa -3'
miRNA:   3'- aCGuGGAGCUGCgCGAgCg--GaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 53339 0.67 0.423909
Target:  5'- -uCACCUaCGAuuacguuCGCGCcCGCCUCGacGGCu -3'
miRNA:   3'- acGUGGA-GCU-------GCGCGaGCGGAGC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 52393 0.74 0.146665
Target:  5'- aGCcuGCCUCGggccaucgagguguGgGCGCUCGaCUCGGGCg -3'
miRNA:   3'- aCG--UGGAGC--------------UgCGCGAGCgGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 51778 0.66 0.452209
Target:  5'- aGCGCCUUGAgguauucgGCGCUCGg--CGGGUc -3'
miRNA:   3'- aCGUGGAGCUg-------CGCGAGCggaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 51659 0.67 0.398417
Target:  5'- gGUugC-CG-CGCGggCGCgUCGGGCa -3'
miRNA:   3'- aCGugGaGCuGCGCgaGCGgAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 51512 0.7 0.26356
Target:  5'- cGCcgAUCUCGACGCGCgUGaCCUCGuGCa -3'
miRNA:   3'- aCG--UGGAGCUGCGCGaGC-GGAGCcCG- -5'
23225 5' -61.4 NC_005259.1 + 50697 0.69 0.296891
Target:  5'- cGCugCUCGucguCGCGCUUGagcCGGGUg -3'
miRNA:   3'- aCGugGAGCu---GCGCGAGCggaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 50522 1.11 0.000258
Target:  5'- cUGCACCUCGACGCGCUCGCCUCGGGCg -3'
miRNA:   3'- -ACGUGGAGCUGCGCGAGCGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 50398 0.7 0.28318
Target:  5'- cGCGgCUCGccgaGCGCGCcggUGCCuugaccggcUCGGGCa -3'
miRNA:   3'- aCGUgGAGC----UGCGCGa--GCGG---------AGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 48490 0.73 0.172572
Target:  5'- cUGUuCCUCGACGCGCUUGa---GGGCc -3'
miRNA:   3'- -ACGuGGAGCUGCGCGAGCggagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 47912 0.67 0.389857
Target:  5'- aGCGCCUUGAUG-GCgUCGCCga-GGCc -3'
miRNA:   3'- aCGUGGAGCUGCgCG-AGCGGagcCCG- -5'
23225 5' -61.4 NC_005259.1 + 46769 0.66 0.48055
Target:  5'- cUGCGCCgacaGcCGCGCcCGCC--GGGCc -3'
miRNA:   3'- -ACGUGGag--CuGCGCGaGCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 46563 0.7 0.289287
Target:  5'- cGCGCCuauggucgcggcgUCGAcCGCGC-CGCC-CGaGGCg -3'
miRNA:   3'- aCGUGG-------------AGCU-GCGCGaGCGGaGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 46156 0.7 0.269975
Target:  5'- aGCAUgUCGAauacCGCUUGCCcgcCGGGCg -3'
miRNA:   3'- aCGUGgAGCUgc--GCGAGCGGa--GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 45733 0.75 0.133152
Target:  5'- cGCACCacCGAggcCGCGCacCGCCUCGGGg -3'
miRNA:   3'- aCGUGGa-GCU---GCGCGa-GCGGAGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.