miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23225 5' -61.4 NC_005259.1 + 68415 0.72 0.195965
Target:  5'- cGUagACCUUGACGC-CUCGCg-CGGGCc -3'
miRNA:   3'- aCG--UGGAGCUGCGcGAGCGgaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 66973 0.66 0.452209
Target:  5'- cGCGCCUCGcggugaauCGCGUUguaCGCCUCacGCa -3'
miRNA:   3'- aCGUGGAGCu-------GCGCGA---GCGGAGccCG- -5'
23225 5' -61.4 NC_005259.1 + 66242 0.67 0.398417
Target:  5'- gUGCAgCCaUCGACGCaGCgcgGCCcgcgcCGGGCg -3'
miRNA:   3'- -ACGU-GG-AGCUGCG-CGag-CGGa----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 66039 0.68 0.364912
Target:  5'- cGCGCgagCUCGACGUagacGC-CGCCgUGGGCc -3'
miRNA:   3'- aCGUG---GAGCUGCG----CGaGCGGaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 65987 0.66 0.490189
Target:  5'- cGCGCCgagcagccgcUCGACGUGgUgCGCaccCUCGGGg -3'
miRNA:   3'- aCGUGG----------AGCUGCGCgA-GCG---GAGCCCg -5'
23225 5' -61.4 NC_005259.1 + 65789 0.71 0.239135
Target:  5'- cGCcaugGCCUCGACGCGCUgGUCgaaacgCuGGCc -3'
miRNA:   3'- aCG----UGGAGCUGCGCGAgCGGa-----GcCCG- -5'
23225 5' -61.4 NC_005259.1 + 64773 0.73 0.17213
Target:  5'- gUGCGCCUCGGCGgccCGCUgcgacuggcugugUGCCUCGGccucgGCg -3'
miRNA:   3'- -ACGUGGAGCUGC---GCGA-------------GCGGAGCC-----CG- -5'
23225 5' -61.4 NC_005259.1 + 63648 0.67 0.415893
Target:  5'- aGCugCUCgcuggccggGACGcCGgaCaCCUCGGGCa -3'
miRNA:   3'- aCGugGAG---------CUGC-GCgaGcGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 63206 0.73 0.17213
Target:  5'- gUGCGCCUCGAcCGC-CUCGUCagacagaUCGGGg -3'
miRNA:   3'- -ACGUGGAGCU-GCGcGAGCGG-------AGCCCg -5'
23225 5' -61.4 NC_005259.1 + 62922 0.68 0.381419
Target:  5'- cGCucguCCUCGGuuUGCgGCUCGCgCUgcugcCGGGCa -3'
miRNA:   3'- aCGu---GGAGCU--GCG-CGAGCG-GA-----GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 61928 0.67 0.407096
Target:  5'- gGCAgCUCGGucucuCGCGCgggUGCCg-GGGCc -3'
miRNA:   3'- aCGUgGAGCU-----GCGCGa--GCGGagCCCG- -5'
23225 5' -61.4 NC_005259.1 + 61854 0.67 0.398417
Target:  5'- aGCACCUCGGC-CaC-CGCCUCGcGuGCc -3'
miRNA:   3'- aCGUGGAGCUGcGcGaGCGGAGC-C-CG- -5'
23225 5' -61.4 NC_005259.1 + 61522 0.71 0.245058
Target:  5'- gGUcgACCUCGuCGgGaauuucCUCGUCUCGGGCg -3'
miRNA:   3'- aCG--UGGAGCuGCgC------GAGCGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 61065 0.69 0.303938
Target:  5'- uUGUGCCgggcaUCGGCauagGCGUcgUCgGCCUCGGGCu -3'
miRNA:   3'- -ACGUGG-----AGCUG----CGCG--AG-CGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 60453 0.69 0.311113
Target:  5'- cGaCACCUCGAuucCGaCGCUgGUCUCGuaGGCa -3'
miRNA:   3'- aC-GUGGAGCU---GC-GCGAgCGGAGC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 60144 0.69 0.311113
Target:  5'- cGCgGCCUUGGC-CGC-CGCCUcagcggccucaCGGGCg -3'
miRNA:   3'- aCG-UGGAGCUGcGCGaGCGGA-----------GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 59390 0.67 0.389857
Target:  5'- cGUGCCUCcGCGCGCgagcgUGaCCUCGcGCa -3'
miRNA:   3'- aCGUGGAGcUGCGCGa----GC-GGAGCcCG- -5'
23225 5' -61.4 NC_005259.1 + 58878 0.68 0.380582
Target:  5'- cGuCGCCUCGGCauCGCcgUCGucaucacCCUCGGGCu -3'
miRNA:   3'- aC-GUGGAGCUGc-GCG--AGC-------GGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 58831 0.73 0.181153
Target:  5'- gGCAcCCUCGcCGCcCUCGgucucacCCUCGGGCu -3'
miRNA:   3'- aCGU-GGAGCuGCGcGAGC-------GGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 58785 0.71 0.245058
Target:  5'- gUGCGCCggUCGAgGCGgugaUUGCCUcggCGGGCu -3'
miRNA:   3'- -ACGUGG--AGCUgCGCg---AGCGGA---GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.