miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23226 5' -57.1 NC_005259.1 + 62618 0.66 0.69344
Target:  5'- gAcgCCGCaccGUGGCCa--GCACCGCa -3'
miRNA:   3'- aUuaGGCGa--CACCGGagcUGUGGCGg -5'
23226 5' -57.1 NC_005259.1 + 67144 0.72 0.322508
Target:  5'- ---aCCGCUGUGaGCCgcuugUCGAUgguggcggccauGCCGCCg -3'
miRNA:   3'- auuaGGCGACAC-CGG-----AGCUG------------UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 56255 0.72 0.330287
Target:  5'- gGAUCgGC---GGCCUUGAgCGCCGCCg -3'
miRNA:   3'- aUUAGgCGacaCCGGAGCU-GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 28145 0.72 0.330287
Target:  5'- cGAUgaGCUGcccGGCCUCGACgcGCUGCCc -3'
miRNA:   3'- aUUAggCGACa--CCGGAGCUG--UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 57781 0.72 0.330287
Target:  5'- gAAUCUGCgcGUcGGagacguugaagaCCUCGACGCCGCCc -3'
miRNA:   3'- aUUAGGCGa-CA-CC------------GGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 42190 0.72 0.349518
Target:  5'- -uAUCCGCUGcGcGCCgUCGcgauggaugcccgccGCGCCGCCg -3'
miRNA:   3'- auUAGGCGACaC-CGG-AGC---------------UGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 26123 0.71 0.362774
Target:  5'- ---gCCGCcgGUcGCCggucCGACGCCGCCg -3'
miRNA:   3'- auuaGGCGa-CAcCGGa---GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 60137 0.71 0.362774
Target:  5'- -cGUCCuGCgc-GGCCUUGGcCGCCGCCu -3'
miRNA:   3'- auUAGG-CGacaCCGGAGCU-GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 14307 0.71 0.362774
Target:  5'- cGGUgCGUa-UGGCCgcccUCGACGCCGCCg -3'
miRNA:   3'- aUUAgGCGacACCGG----AGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 23636 0.72 0.322508
Target:  5'- ---cUCGgUGUGGUUUCGGC-CCGCCg -3'
miRNA:   3'- auuaGGCgACACCGGAGCUGuGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 45490 0.72 0.314866
Target:  5'- ---gCCGCUGgUGGCCUUGGucgcuguggcCACCGCg -3'
miRNA:   3'- auuaGGCGAC-ACCGGAGCU----------GUGGCGg -5'
23226 5' -57.1 NC_005259.1 + 32199 0.73 0.278717
Target:  5'- cGGUCUGCgacuUGGCCUCaGACACCgacGCCu -3'
miRNA:   3'- aUUAGGCGac--ACCGGAG-CUGUGG---CGG- -5'
23226 5' -57.1 NC_005259.1 + 37358 0.78 0.127104
Target:  5'- ---gCCGCUGUGcgaguagcucacGcCCUCGGCACCGCCc -3'
miRNA:   3'- auuaGGCGACAC------------C-GGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 56740 0.77 0.15077
Target:  5'- -uAUCCGCcaccgaugacccacgUGUGGCCcaucggggaccgcUUGACACCGCCg -3'
miRNA:   3'- auUAGGCG---------------ACACCGG-------------AGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 42765 0.77 0.157811
Target:  5'- cGAUCUGCUcgGcGGUCUCGGgGCCGCCa -3'
miRNA:   3'- aUUAGGCGA--CaCCGGAGCUgUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 46857 0.77 0.166475
Target:  5'- gAGUCCGCUGUcGGUCgaggcuugaaUCG-CGCCGCCg -3'
miRNA:   3'- aUUAGGCGACA-CCGG----------AGCuGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 20476 0.76 0.200233
Target:  5'- ---aCCGCcGUcGaCCUCGACACCGCCc -3'
miRNA:   3'- auuaGGCGaCAcC-GGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 59522 0.75 0.205516
Target:  5'- ---aUUGCUGuUGGCCUUaGCGCCGCCa -3'
miRNA:   3'- auuaGGCGAC-ACCGGAGcUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 13547 0.74 0.239794
Target:  5'- cAGUUCGCgaUGUGGCCcgcCGACcCCGCCc -3'
miRNA:   3'- aUUAGGCG--ACACCGGa--GCUGuGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 49646 0.73 0.278717
Target:  5'- -cGUCgGCgaugGcGGCCUCGAUACgCGCCu -3'
miRNA:   3'- auUAGgCGa---CaCCGGAGCUGUG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.