miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23226 5' -57.1 NC_005259.1 + 6415 0.69 0.509858
Target:  5'- ---cCUGaUGUGGCCcgaccucgccgaugUCGGCACCGUCg -3'
miRNA:   3'- auuaGGCgACACCGG--------------AGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 8369 0.69 0.49262
Target:  5'- --cUCgGCgGcGGCCUCGGCAUCGgCg -3'
miRNA:   3'- auuAGgCGaCaCCGGAGCUGUGGCgG- -5'
23226 5' -57.1 NC_005259.1 + 9223 0.68 0.565059
Target:  5'- ---aCCGCUGcGGUCUUGAUcuucaagggGCCGCa -3'
miRNA:   3'- auuaGGCGACaCCGGAGCUG---------UGGCGg -5'
23226 5' -57.1 NC_005259.1 + 10402 0.67 0.607731
Target:  5'- gGAUCuCGCUcaGGcCCUUGAgCACCGUCc -3'
miRNA:   3'- aUUAG-GCGAcaCC-GGAGCU-GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 12228 0.68 0.565059
Target:  5'- ---cCCGCUGgccgGGCaauggUC-ACACCGCCu -3'
miRNA:   3'- auuaGGCGACa---CCGg----AGcUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 12272 0.66 0.661448
Target:  5'- -cAUCgCGUcGUGGaUCUC-ACGCCGCCg -3'
miRNA:   3'- auUAG-GCGaCACC-GGAGcUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 12510 0.66 0.672152
Target:  5'- ---gCCGCUG-GGCCgcUCGGCuACCcguagaGCCg -3'
miRNA:   3'- auuaGGCGACaCCGG--AGCUG-UGG------CGG- -5'
23226 5' -57.1 NC_005259.1 + 13217 0.67 0.62922
Target:  5'- ---gCCaGCgGUGgGCCUCGAC-CgGCCa -3'
miRNA:   3'- auuaGG-CGaCAC-CGGAGCUGuGgCGG- -5'
23226 5' -57.1 NC_005259.1 + 13547 0.74 0.239794
Target:  5'- cAGUUCGCgaUGUGGCCcgcCGACcCCGCCc -3'
miRNA:   3'- aUUAGGCG--ACACCGGa--GCUGuGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 13678 0.69 0.502729
Target:  5'- cGGUgUGCUcguggacccGUGGCCggUCGACcCCGCCu -3'
miRNA:   3'- aUUAgGCGA---------CACCGG--AGCUGuGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 14307 0.71 0.362774
Target:  5'- cGGUgCGUa-UGGCCgcccUCGACGCCGCCg -3'
miRNA:   3'- aUUAgGCGacACCGG----AGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 15210 0.71 0.388556
Target:  5'- ----aUGCUGUGGCgCUCGGCGCuCGgCa -3'
miRNA:   3'- auuagGCGACACCG-GAGCUGUG-GCgG- -5'
23226 5' -57.1 NC_005259.1 + 17373 0.69 0.49262
Target:  5'- ----gCGCUggucGUGGUCgacugCGACACUGCCg -3'
miRNA:   3'- auuagGCGA----CACCGGa----GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 18613 0.68 0.565059
Target:  5'- cAGUCCGCacagcgGUGuGCCgCG-CAUCGCCc -3'
miRNA:   3'- aUUAGGCGa-----CAC-CGGaGCuGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 18748 0.66 0.69344
Target:  5'- ---gUCGUcgGUGGUgCUCGACAUgGCCu -3'
miRNA:   3'- auuaGGCGa-CACCG-GAGCUGUGgCGG- -5'
23226 5' -57.1 NC_005259.1 + 19849 0.68 0.52321
Target:  5'- ---gCCGCgcucggUGUGGCgCUCG-CGcCCGCCg -3'
miRNA:   3'- auuaGGCG------ACACCG-GAGCuGU-GGCGG- -5'
23226 5' -57.1 NC_005259.1 + 20476 0.76 0.200233
Target:  5'- ---aCCGCcGUcGaCCUCGACACCGCCc -3'
miRNA:   3'- auuaGGCGaCAcC-GGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 21574 0.71 0.37983
Target:  5'- ---aCUGCgagGUcgauuGGCCaugCGACACCGCCa -3'
miRNA:   3'- auuaGGCGa--CA-----CCGGa--GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 22981 0.67 0.575669
Target:  5'- ---cUCGUgcccGGUgUCGACGCCGCCg -3'
miRNA:   3'- auuaGGCGaca-CCGgAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 23463 0.7 0.453175
Target:  5'- --uUUCGCacggGGCCUCGGCAUUGUCg -3'
miRNA:   3'- auuAGGCGaca-CCGGAGCUGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.