miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23226 5' -57.1 NC_005259.1 + 67900 0.66 0.682819
Target:  5'- --uUCgGCUGUgGGUCUCGGCGagGUCa -3'
miRNA:   3'- auuAGgCGACA-CCGGAGCUGUggCGG- -5'
23226 5' -57.1 NC_005259.1 + 67209 0.69 0.502729
Target:  5'- ---gCCGCUGUcGGCggggUCGAUGCCGaCCa -3'
miRNA:   3'- auuaGGCGACA-CCGg---AGCUGUGGC-GG- -5'
23226 5' -57.1 NC_005259.1 + 67144 0.72 0.322508
Target:  5'- ---aCCGCUGUGaGCCgcuugUCGAUgguggcggccauGCCGCCg -3'
miRNA:   3'- auuaGGCGACAC-CGG-----AGCUG------------UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 65784 0.68 0.52321
Target:  5'- cAGUgCGCcaUGGCCUCGACG-CGCUg -3'
miRNA:   3'- aUUAgGCGacACCGGAGCUGUgGCGG- -5'
23226 5' -57.1 NC_005259.1 + 64764 0.69 0.49262
Target:  5'- ---cUCGCgacgGUGcGCCUCGGCGgcCCGCUg -3'
miRNA:   3'- auuaGGCGa---CAC-CGGAGCUGU--GGCGG- -5'
23226 5' -57.1 NC_005259.1 + 62618 0.66 0.69344
Target:  5'- gAcgCCGCaccGUGGCCa--GCACCGCa -3'
miRNA:   3'- aUuaGGCGa--CACCGGagcUGUGGCGg -5'
23226 5' -57.1 NC_005259.1 + 60416 0.69 0.47269
Target:  5'- cGAUCUGCUcggggGUGGCCcaCGGgGCgGCCa -3'
miRNA:   3'- aUUAGGCGA-----CACCGGa-GCUgUGgCGG- -5'
23226 5' -57.1 NC_005259.1 + 60137 0.71 0.362774
Target:  5'- -cGUCCuGCgc-GGCCUUGGcCGCCGCCu -3'
miRNA:   3'- auUAGG-CGacaCCGGAGCU-GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 59522 0.75 0.205516
Target:  5'- ---aUUGCUGuUGGCCUUaGCGCCGCCa -3'
miRNA:   3'- auuaGGCGAC-ACCGGAGcUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 58873 0.71 0.37983
Target:  5'- ---gUCGUcGUcGCCUCGGCAUCGCCg -3'
miRNA:   3'- auuaGGCGaCAcCGGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 58288 0.68 0.533571
Target:  5'- aGGUUCGCga-GGCCagCgGAUACCGCCa -3'
miRNA:   3'- aUUAGGCGacaCCGGa-G-CUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 57781 0.72 0.330287
Target:  5'- gAAUCUGCgcGUcGGagacguugaagaCCUCGACGCCGCCc -3'
miRNA:   3'- aUUAGGCGa-CA-CC------------GGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 56740 0.77 0.15077
Target:  5'- -uAUCCGCcaccgaugacccacgUGUGGCCcaucggggaccgcUUGACACCGCCg -3'
miRNA:   3'- auUAGGCG---------------ACACCGG-------------AGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 56255 0.72 0.330287
Target:  5'- gGAUCgGC---GGCCUUGAgCGCCGCCg -3'
miRNA:   3'- aUUAGgCGacaCCGGAGCU-GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 51490 0.66 0.661448
Target:  5'- ---aCCGCcGgGGauaggUCGACGCCGCCg -3'
miRNA:   3'- auuaGGCGaCaCCgg---AGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 50032 1.09 0.00084
Target:  5'- gUAAUCCGCUGUGGCCUCGACACCGCCc -3'
miRNA:   3'- -AUUAGGCGACACCGGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 49646 0.73 0.278717
Target:  5'- -cGUCgGCgaugGcGGCCUCGAUACgCGCCu -3'
miRNA:   3'- auUAGgCGa---CaCCGGAGCUGUG-GCGG- -5'
23226 5' -57.1 NC_005259.1 + 48916 0.67 0.597012
Target:  5'- ---gCUGCUG-GGCCUgacCGACGCCacgcacaagGCCa -3'
miRNA:   3'- auuaGGCGACaCCGGA---GCUGUGG---------CGG- -5'
23226 5' -57.1 NC_005259.1 + 48383 0.66 0.661448
Target:  5'- -cGUCUGUUGUcguuGCCgcCGACGcCCGCCg -3'
miRNA:   3'- auUAGGCGACAc---CGGa-GCUGU-GGCGG- -5'
23226 5' -57.1 NC_005259.1 + 48106 0.66 0.644272
Target:  5'- gGGUCCGgUcaGgaaaccgagcacaccGCCUCGAcCACCGCCg -3'
miRNA:   3'- aUUAGGCgAcaC---------------CGGAGCU-GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.