miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23226 5' -57.1 NC_005259.1 + 23636 0.72 0.322508
Target:  5'- ---cUCGgUGUGGUUUCGGC-CCGCCg -3'
miRNA:   3'- auuaGGCgACACCGGAGCUGuGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 23886 0.71 0.397413
Target:  5'- -uAUCCGCUGccGCC-CGA-GCCGCCg -3'
miRNA:   3'- auUAGGCGACacCGGaGCUgUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 24555 0.67 0.62922
Target:  5'- aGAUCgGCgggGUGuaCUCGuggGCACCGCa -3'
miRNA:   3'- aUUAGgCGa--CACcgGAGC---UGUGGCGg -5'
23226 5' -57.1 NC_005259.1 + 25168 0.66 0.682819
Target:  5'- ---cCCGUUG-GGUC-CGACccguacGCCGCCg -3'
miRNA:   3'- auuaGGCGACaCCGGaGCUG------UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 26046 0.67 0.597012
Target:  5'- aGcgCCGCcggGuUGGCCaUGcCGCCGCCg -3'
miRNA:   3'- aUuaGGCGa--C-ACCGGaGCuGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 26123 0.71 0.362774
Target:  5'- ---gCCGCcgGUcGCCggucCGACGCCGCCg -3'
miRNA:   3'- auuaGGCGa-CAcCGGa---GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 26772 0.71 0.388556
Target:  5'- aUGAUgCCGCcgGU-GCCUCGgaacaccaGCGCCGCCg -3'
miRNA:   3'- -AUUA-GGCGa-CAcCGGAGC--------UGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 28145 0.72 0.330287
Target:  5'- cGAUgaGCUGcccGGCCUCGACgcGCUGCCc -3'
miRNA:   3'- aUUAggCGACa--CCGGAGCUG--UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 28574 0.71 0.397413
Target:  5'- ---cCCGCcaccGCCUCuGACGCCGCCa -3'
miRNA:   3'- auuaGGCGacacCGGAG-CUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 29855 0.66 0.650718
Target:  5'- ---cUCGCUGUcgGGCaUCGAacugcCACCGCCc -3'
miRNA:   3'- auuaGGCGACA--CCGgAGCU-----GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 30102 0.68 0.52321
Target:  5'- -cGUCggaGCUGUGuGCaUCGGCAUUGCCg -3'
miRNA:   3'- auUAGg--CGACAC-CGgAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 30129 0.66 0.682819
Target:  5'- -cGUCCgGCUGcgauaccucgGGCagCUCGACcggGCCGCCu -3'
miRNA:   3'- auUAGG-CGACa---------CCG--GAGCUG---UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 32199 0.73 0.278717
Target:  5'- cGGUCUGCgacuUGGCCUCaGACACCgacGCCu -3'
miRNA:   3'- aUUAGGCGac--ACCGGAG-CUGUGG---CGG- -5'
23226 5' -57.1 NC_005259.1 + 33296 0.66 0.682819
Target:  5'- -cAUCCacgGCUGcGG-CUCGAUcCCGCCg -3'
miRNA:   3'- auUAGG---CGACaCCgGAGCUGuGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 34012 0.68 0.554502
Target:  5'- ---aCCgGCUGUauccGGCCUCGGCGgCGUg -3'
miRNA:   3'- auuaGG-CGACA----CCGGAGCUGUgGCGg -5'
23226 5' -57.1 NC_005259.1 + 35451 0.67 0.575669
Target:  5'- -uGUCCGC----GCCcacCGGCACCGCCa -3'
miRNA:   3'- auUAGGCGacacCGGa--GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 36859 0.68 0.52321
Target:  5'- ---cCCGCUGc-GCCguugcUGGCACCGCCc -3'
miRNA:   3'- auuaGGCGACacCGGa----GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 36960 0.69 0.512927
Target:  5'- ---cCCGCgagaccGCCUCGgcccGCACCGCCg -3'
miRNA:   3'- auuaGGCGacac--CGGAGC----UGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 37358 0.78 0.127104
Target:  5'- ---gCCGCUGUGcgaguagcucacGcCCUCGGCACCGCCc -3'
miRNA:   3'- auuaGGCGACAC------------C-GGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 40835 0.67 0.597012
Target:  5'- aUGggCCGC-GUGuugaugcccugcGCCUCGACcaugGCCGCCc -3'
miRNA:   3'- -AUuaGGCGaCAC------------CGGAGCUG----UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.