Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23226 | 5' | -57.1 | NC_005259.1 | + | 21574 | 0.71 | 0.37983 |
Target: 5'- ---aCUGCgagGUcgauuGGCCaugCGACACCGCCa -3' miRNA: 3'- auuaGGCGa--CA-----CCGGa--GCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 58873 | 0.71 | 0.37983 |
Target: 5'- ---gUCGUcGUcGCCUCGGCAUCGCCg -3' miRNA: 3'- auuaGGCGaCAcCGGAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 45333 | 0.71 | 0.388556 |
Target: 5'- ---aCUGC-GUGGCCU--GCGCCGCCu -3' miRNA: 3'- auuaGGCGaCACCGGAgcUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 15210 | 0.71 | 0.388556 |
Target: 5'- ----aUGCUGUGGCgCUCGGCGCuCGgCa -3' miRNA: 3'- auuagGCGACACCG-GAGCUGUG-GCgG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 26772 | 0.71 | 0.388556 |
Target: 5'- aUGAUgCCGCcgGU-GCCUCGgaacaccaGCGCCGCCg -3' miRNA: 3'- -AUUA-GGCGa-CAcCGGAGC--------UGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 23886 | 0.71 | 0.397413 |
Target: 5'- -uAUCCGCUGccGCC-CGA-GCCGCCg -3' miRNA: 3'- auUAGGCGACacCGGaGCUgUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 28574 | 0.71 | 0.397413 |
Target: 5'- ---cCCGCcaccGCCUCuGACGCCGCCa -3' miRNA: 3'- auuaGGCGacacCGGAG-CUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 23463 | 0.7 | 0.453175 |
Target: 5'- --uUUCGCacggGGCCUCGGCAUUGUCg -3' miRNA: 3'- auuAGGCGaca-CCGGAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 60416 | 0.69 | 0.47269 |
Target: 5'- cGAUCUGCUcggggGUGGCCcaCGGgGCgGCCa -3' miRNA: 3'- aUUAGGCGA-----CACCGGa-GCUgUGgCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 46916 | 0.69 | 0.47269 |
Target: 5'- cAGUCCGC-GUGcGCCgcCGagcuugcccgccGCGCCGCCg -3' miRNA: 3'- aUUAGGCGaCAC-CGGa-GC------------UGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 8369 | 0.69 | 0.49262 |
Target: 5'- --cUCgGCgGcGGCCUCGGCAUCGgCg -3' miRNA: 3'- auuAGgCGaCaCCGGAGCUGUGGCgG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 17373 | 0.69 | 0.49262 |
Target: 5'- ----gCGCUggucGUGGUCgacugCGACACUGCCg -3' miRNA: 3'- auuagGCGA----CACCGGa----GCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 64764 | 0.69 | 0.49262 |
Target: 5'- ---cUCGCgacgGUGcGCCUCGGCGgcCCGCUg -3' miRNA: 3'- auuaGGCGa---CAC-CGGAGCUGU--GGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 13678 | 0.69 | 0.502729 |
Target: 5'- cGGUgUGCUcguggacccGUGGCCggUCGACcCCGCCu -3' miRNA: 3'- aUUAgGCGA---------CACCGG--AGCUGuGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 67209 | 0.69 | 0.502729 |
Target: 5'- ---gCCGCUGUcGGCggggUCGAUGCCGaCCa -3' miRNA: 3'- auuaGGCGACA-CCGg---AGCUGUGGC-GG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 6415 | 0.69 | 0.509858 |
Target: 5'- ---cCUGaUGUGGCCcgaccucgccgaugUCGGCACCGUCg -3' miRNA: 3'- auuaGGCgACACCGG--------------AGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 36960 | 0.69 | 0.512927 |
Target: 5'- ---cCCGCgagaccGCCUCGgcccGCACCGCCg -3' miRNA: 3'- auuaGGCGacac--CGGAGC----UGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 19849 | 0.68 | 0.52321 |
Target: 5'- ---gCCGCgcucggUGUGGCgCUCG-CGcCCGCCg -3' miRNA: 3'- auuaGGCG------ACACCG-GAGCuGU-GGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 30102 | 0.68 | 0.52321 |
Target: 5'- -cGUCggaGCUGUGuGCaUCGGCAUUGCCg -3' miRNA: 3'- auUAGg--CGACAC-CGgAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 65784 | 0.68 | 0.52321 |
Target: 5'- cAGUgCGCcaUGGCCUCGACG-CGCUg -3' miRNA: 3'- aUUAgGCGacACCGGAGCUGUgGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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