miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23226 5' -57.1 NC_005259.1 + 58873 0.71 0.37983
Target:  5'- ---gUCGUcGUcGCCUCGGCAUCGCCg -3'
miRNA:   3'- auuaGGCGaCAcCGGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 21574 0.71 0.37983
Target:  5'- ---aCUGCgagGUcgauuGGCCaugCGACACCGCCa -3'
miRNA:   3'- auuaGGCGa--CA-----CCGGa--GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 45333 0.71 0.388556
Target:  5'- ---aCUGC-GUGGCCU--GCGCCGCCu -3'
miRNA:   3'- auuaGGCGaCACCGGAgcUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 15210 0.71 0.388556
Target:  5'- ----aUGCUGUGGCgCUCGGCGCuCGgCa -3'
miRNA:   3'- auuagGCGACACCG-GAGCUGUG-GCgG- -5'
23226 5' -57.1 NC_005259.1 + 26772 0.71 0.388556
Target:  5'- aUGAUgCCGCcgGU-GCCUCGgaacaccaGCGCCGCCg -3'
miRNA:   3'- -AUUA-GGCGa-CAcCGGAGC--------UGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 28574 0.71 0.397413
Target:  5'- ---cCCGCcaccGCCUCuGACGCCGCCa -3'
miRNA:   3'- auuaGGCGacacCGGAG-CUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 23886 0.71 0.397413
Target:  5'- -uAUCCGCUGccGCC-CGA-GCCGCCg -3'
miRNA:   3'- auUAGGCGACacCGGaGCUgUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 23463 0.7 0.453175
Target:  5'- --uUUCGCacggGGCCUCGGCAUUGUCg -3'
miRNA:   3'- auuAGGCGaca-CCGGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 60416 0.69 0.47269
Target:  5'- cGAUCUGCUcggggGUGGCCcaCGGgGCgGCCa -3'
miRNA:   3'- aUUAGGCGA-----CACCGGa-GCUgUGgCGG- -5'
23226 5' -57.1 NC_005259.1 + 46916 0.69 0.47269
Target:  5'- cAGUCCGC-GUGcGCCgcCGagcuugcccgccGCGCCGCCg -3'
miRNA:   3'- aUUAGGCGaCAC-CGGa-GC------------UGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 64764 0.69 0.49262
Target:  5'- ---cUCGCgacgGUGcGCCUCGGCGgcCCGCUg -3'
miRNA:   3'- auuaGGCGa---CAC-CGGAGCUGU--GGCGG- -5'
23226 5' -57.1 NC_005259.1 + 17373 0.69 0.49262
Target:  5'- ----gCGCUggucGUGGUCgacugCGACACUGCCg -3'
miRNA:   3'- auuagGCGA----CACCGGa----GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 8369 0.69 0.49262
Target:  5'- --cUCgGCgGcGGCCUCGGCAUCGgCg -3'
miRNA:   3'- auuAGgCGaCaCCGGAGCUGUGGCgG- -5'
23226 5' -57.1 NC_005259.1 + 13678 0.69 0.502729
Target:  5'- cGGUgUGCUcguggacccGUGGCCggUCGACcCCGCCu -3'
miRNA:   3'- aUUAgGCGA---------CACCGG--AGCUGuGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 67209 0.69 0.502729
Target:  5'- ---gCCGCUGUcGGCggggUCGAUGCCGaCCa -3'
miRNA:   3'- auuaGGCGACA-CCGg---AGCUGUGGC-GG- -5'
23226 5' -57.1 NC_005259.1 + 6415 0.69 0.509858
Target:  5'- ---cCUGaUGUGGCCcgaccucgccgaugUCGGCACCGUCg -3'
miRNA:   3'- auuaGGCgACACCGG--------------AGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 36960 0.69 0.512927
Target:  5'- ---cCCGCgagaccGCCUCGgcccGCACCGCCg -3'
miRNA:   3'- auuaGGCGacac--CGGAGC----UGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 36859 0.68 0.52321
Target:  5'- ---cCCGCUGc-GCCguugcUGGCACCGCCc -3'
miRNA:   3'- auuaGGCGACacCGGa----GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 65784 0.68 0.52321
Target:  5'- cAGUgCGCcaUGGCCUCGACG-CGCUg -3'
miRNA:   3'- aUUAgGCGacACCGGAGCUGUgGCGG- -5'
23226 5' -57.1 NC_005259.1 + 30102 0.68 0.52321
Target:  5'- -cGUCggaGCUGUGuGCaUCGGCAUUGCCg -3'
miRNA:   3'- auUAGg--CGACAC-CGgAGCUGUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.