Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23226 | 5' | -57.1 | NC_005259.1 | + | 26046 | 0.67 | 0.597012 |
Target: 5'- aGcgCCGCcggGuUGGCCaUGcCGCCGCCg -3' miRNA: 3'- aUuaGGCGa--C-ACCGGaGCuGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 22981 | 0.67 | 0.575669 |
Target: 5'- ---cUCGUgcccGGUgUCGACGCCGCCg -3' miRNA: 3'- auuaGGCGaca-CCGgAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 35451 | 0.67 | 0.575669 |
Target: 5'- -uGUCCGC----GCCcacCGGCACCGCCa -3' miRNA: 3'- auUAGGCGacacCGGa--GCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 12228 | 0.68 | 0.565059 |
Target: 5'- ---cCCGCUGgccgGGCaauggUC-ACACCGCCu -3' miRNA: 3'- auuaGGCGACa---CCGg----AGcUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 18613 | 0.68 | 0.565059 |
Target: 5'- cAGUCCGCacagcgGUGuGCCgCG-CAUCGCCc -3' miRNA: 3'- aUUAGGCGa-----CAC-CGGaGCuGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 9223 | 0.68 | 0.565059 |
Target: 5'- ---aCCGCUGcGGUCUUGAUcuucaagggGCCGCa -3' miRNA: 3'- auuaGGCGACaCCGGAGCUG---------UGGCGg -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 34012 | 0.68 | 0.554502 |
Target: 5'- ---aCCgGCUGUauccGGCCUCGGCGgCGUg -3' miRNA: 3'- auuaGG-CGACA----CCGGAGCUGUgGCGg -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 47220 | 0.68 | 0.544004 |
Target: 5'- --uUCUGCUGUc-CCUCGACGCUGUUg -3' miRNA: 3'- auuAGGCGACAccGGAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 46345 | 0.68 | 0.533571 |
Target: 5'- ---aCCGCuUGUagguucugGGCCgcgaUGGCACCGCCc -3' miRNA: 3'- auuaGGCG-ACA--------CCGGa---GCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 58288 | 0.68 | 0.533571 |
Target: 5'- aGGUUCGCga-GGCCagCgGAUACCGCCa -3' miRNA: 3'- aUUAGGCGacaCCGGa-G-CUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 36859 | 0.68 | 0.52321 |
Target: 5'- ---cCCGCUGc-GCCguugcUGGCACCGCCc -3' miRNA: 3'- auuaGGCGACacCGGa----GCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 65784 | 0.68 | 0.52321 |
Target: 5'- cAGUgCGCcaUGGCCUCGACG-CGCUg -3' miRNA: 3'- aUUAgGCGacACCGGAGCUGUgGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 30102 | 0.68 | 0.52321 |
Target: 5'- -cGUCggaGCUGUGuGCaUCGGCAUUGCCg -3' miRNA: 3'- auUAGg--CGACAC-CGgAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 19849 | 0.68 | 0.52321 |
Target: 5'- ---gCCGCgcucggUGUGGCgCUCG-CGcCCGCCg -3' miRNA: 3'- auuaGGCG------ACACCG-GAGCuGU-GGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 36960 | 0.69 | 0.512927 |
Target: 5'- ---cCCGCgagaccGCCUCGgcccGCACCGCCg -3' miRNA: 3'- auuaGGCGacac--CGGAGC----UGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 6415 | 0.69 | 0.509858 |
Target: 5'- ---cCUGaUGUGGCCcgaccucgccgaugUCGGCACCGUCg -3' miRNA: 3'- auuaGGCgACACCGG--------------AGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 13678 | 0.69 | 0.502729 |
Target: 5'- cGGUgUGCUcguggacccGUGGCCggUCGACcCCGCCu -3' miRNA: 3'- aUUAgGCGA---------CACCGG--AGCUGuGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 67209 | 0.69 | 0.502729 |
Target: 5'- ---gCCGCUGUcGGCggggUCGAUGCCGaCCa -3' miRNA: 3'- auuaGGCGACA-CCGg---AGCUGUGGC-GG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 64764 | 0.69 | 0.49262 |
Target: 5'- ---cUCGCgacgGUGcGCCUCGGCGgcCCGCUg -3' miRNA: 3'- auuaGGCGa---CAC-CGGAGCUGU--GGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 17373 | 0.69 | 0.49262 |
Target: 5'- ----gCGCUggucGUGGUCgacugCGACACUGCCg -3' miRNA: 3'- auuagGCGA----CACCGGa----GCUGUGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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