miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23226 5' -57.1 NC_005259.1 + 8369 0.69 0.49262
Target:  5'- --cUCgGCgGcGGCCUCGGCAUCGgCg -3'
miRNA:   3'- auuAGgCGaCaCCGGAGCUGUGGCgG- -5'
23226 5' -57.1 NC_005259.1 + 46916 0.69 0.47269
Target:  5'- cAGUCCGC-GUGcGCCgcCGagcuugcccgccGCGCCGCCg -3'
miRNA:   3'- aUUAGGCGaCAC-CGGa-GC------------UGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 60416 0.69 0.47269
Target:  5'- cGAUCUGCUcggggGUGGCCcaCGGgGCgGCCa -3'
miRNA:   3'- aUUAGGCGA-----CACCGGa-GCUgUGgCGG- -5'
23226 5' -57.1 NC_005259.1 + 23463 0.7 0.453175
Target:  5'- --uUUCGCacggGGCCUCGGCAUUGUCg -3'
miRNA:   3'- auuAGGCGaca-CCGGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 28574 0.71 0.397413
Target:  5'- ---cCCGCcaccGCCUCuGACGCCGCCa -3'
miRNA:   3'- auuaGGCGacacCGGAG-CUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 23886 0.71 0.397413
Target:  5'- -uAUCCGCUGccGCC-CGA-GCCGCCg -3'
miRNA:   3'- auUAGGCGACacCGGaGCUgUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 26772 0.71 0.388556
Target:  5'- aUGAUgCCGCcgGU-GCCUCGgaacaccaGCGCCGCCg -3'
miRNA:   3'- -AUUA-GGCGa-CAcCGGAGC--------UGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 15210 0.71 0.388556
Target:  5'- ----aUGCUGUGGCgCUCGGCGCuCGgCa -3'
miRNA:   3'- auuagGCGACACCG-GAGCUGUG-GCgG- -5'
23226 5' -57.1 NC_005259.1 + 45333 0.71 0.388556
Target:  5'- ---aCUGC-GUGGCCU--GCGCCGCCu -3'
miRNA:   3'- auuaGGCGaCACCGGAgcUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 58873 0.71 0.37983
Target:  5'- ---gUCGUcGUcGCCUCGGCAUCGCCg -3'
miRNA:   3'- auuaGGCGaCAcCGGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 21574 0.71 0.37983
Target:  5'- ---aCUGCgagGUcgauuGGCCaugCGACACCGCCa -3'
miRNA:   3'- auuaGGCGa--CA-----CCGGa--GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 60137 0.71 0.362774
Target:  5'- -cGUCCuGCgc-GGCCUUGGcCGCCGCCu -3'
miRNA:   3'- auUAGG-CGacaCCGGAGCU-GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 26123 0.71 0.362774
Target:  5'- ---gCCGCcgGUcGCCggucCGACGCCGCCg -3'
miRNA:   3'- auuaGGCGa-CAcCGGa---GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 14307 0.71 0.362774
Target:  5'- cGGUgCGUa-UGGCCgcccUCGACGCCGCCg -3'
miRNA:   3'- aUUAgGCGacACCGG----AGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 42190 0.72 0.349518
Target:  5'- -uAUCCGCUGcGcGCCgUCGcgauggaugcccgccGCGCCGCCg -3'
miRNA:   3'- auUAGGCGACaC-CGG-AGC---------------UGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 57781 0.72 0.330287
Target:  5'- gAAUCUGCgcGUcGGagacguugaagaCCUCGACGCCGCCc -3'
miRNA:   3'- aUUAGGCGa-CA-CC------------GGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 28145 0.72 0.330287
Target:  5'- cGAUgaGCUGcccGGCCUCGACgcGCUGCCc -3'
miRNA:   3'- aUUAggCGACa--CCGGAGCUG--UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 56255 0.72 0.330287
Target:  5'- gGAUCgGC---GGCCUUGAgCGCCGCCg -3'
miRNA:   3'- aUUAGgCGacaCCGGAGCU-GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 67144 0.72 0.322508
Target:  5'- ---aCCGCUGUGaGCCgcuugUCGAUgguggcggccauGCCGCCg -3'
miRNA:   3'- auuaGGCGACAC-CGG-----AGCUG------------UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 23636 0.72 0.322508
Target:  5'- ---cUCGgUGUGGUUUCGGC-CCGCCg -3'
miRNA:   3'- auuaGGCgACACCGGAGCUGuGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.