miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23226 5' -57.1 NC_005259.1 + 19849 0.68 0.52321
Target:  5'- ---gCCGCgcucggUGUGGCgCUCG-CGcCCGCCg -3'
miRNA:   3'- auuaGGCG------ACACCG-GAGCuGU-GGCGG- -5'
23226 5' -57.1 NC_005259.1 + 46345 0.68 0.533571
Target:  5'- ---aCCGCuUGUagguucugGGCCgcgaUGGCACCGCCc -3'
miRNA:   3'- auuaGGCG-ACA--------CCGGa---GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 58288 0.68 0.533571
Target:  5'- aGGUUCGCga-GGCCagCgGAUACCGCCa -3'
miRNA:   3'- aUUAGGCGacaCCGGa-G-CUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 47220 0.68 0.544004
Target:  5'- --uUCUGCUGUc-CCUCGACGCUGUUg -3'
miRNA:   3'- auuAGGCGACAccGGAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 34012 0.68 0.554502
Target:  5'- ---aCCgGCUGUauccGGCCUCGGCGgCGUg -3'
miRNA:   3'- auuaGG-CGACA----CCGGAGCUGUgGCGg -5'
23226 5' -57.1 NC_005259.1 + 18613 0.68 0.565059
Target:  5'- cAGUCCGCacagcgGUGuGCCgCG-CAUCGCCc -3'
miRNA:   3'- aUUAGGCGa-----CAC-CGGaGCuGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 12228 0.68 0.565059
Target:  5'- ---cCCGCUGgccgGGCaauggUC-ACACCGCCu -3'
miRNA:   3'- auuaGGCGACa---CCGg----AGcUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 9223 0.68 0.565059
Target:  5'- ---aCCGCUGcGGUCUUGAUcuucaagggGCCGCa -3'
miRNA:   3'- auuaGGCGACaCCGGAGCUG---------UGGCGg -5'
23226 5' -57.1 NC_005259.1 + 35451 0.67 0.575669
Target:  5'- -uGUCCGC----GCCcacCGGCACCGCCa -3'
miRNA:   3'- auUAGGCGacacCGGa--GCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 22981 0.67 0.575669
Target:  5'- ---cUCGUgcccGGUgUCGACGCCGCCg -3'
miRNA:   3'- auuaGGCGaca-CCGgAGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 48916 0.67 0.597012
Target:  5'- ---gCUGCUG-GGCCUgacCGACGCCacgcacaagGCCa -3'
miRNA:   3'- auuaGGCGACaCCGGA---GCUGUGG---------CGG- -5'
23226 5' -57.1 NC_005259.1 + 26046 0.67 0.597012
Target:  5'- aGcgCCGCcggGuUGGCCaUGcCGCCGCCg -3'
miRNA:   3'- aUuaGGCGa--C-ACCGGaGCuGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 40835 0.67 0.597012
Target:  5'- aUGggCCGC-GUGuugaugcccugcGCCUCGACcaugGCCGCCc -3'
miRNA:   3'- -AUuaGGCGaCAC------------CGGAGCUG----UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 10402 0.67 0.607731
Target:  5'- gGAUCuCGCUcaGGcCCUUGAgCACCGUCc -3'
miRNA:   3'- aUUAG-GCGAcaCC-GGAGCU-GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 45890 0.67 0.628145
Target:  5'- ---cCCGCUGUguuguucGGUCggcgGGCACCGCUg -3'
miRNA:   3'- auuaGGCGACA-------CCGGag--CUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 13217 0.67 0.62922
Target:  5'- ---gCCaGCgGUGgGCCUCGAC-CgGCCa -3'
miRNA:   3'- auuaGG-CGaCAC-CGGAGCUGuGgCGG- -5'
23226 5' -57.1 NC_005259.1 + 24555 0.67 0.62922
Target:  5'- aGAUCgGCgggGUGuaCUCGuggGCACCGCa -3'
miRNA:   3'- aUUAGgCGa--CACcgGAGC---UGUGGCGg -5'
23226 5' -57.1 NC_005259.1 + 46039 0.66 0.638898
Target:  5'- --uUCUGCgUGaccucguagccgaUGGCCUUGagcugcucaaGCACCGCCg -3'
miRNA:   3'- auuAGGCG-AC-------------ACCGGAGC----------UGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 48106 0.66 0.644272
Target:  5'- gGGUCCGgUcaGgaaaccgagcacaccGCCUCGAcCACCGCCg -3'
miRNA:   3'- aUUAGGCgAcaC---------------CGGAGCU-GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 29855 0.66 0.650718
Target:  5'- ---cUCGCUGUcgGGCaUCGAacugcCACCGCCc -3'
miRNA:   3'- auuaGGCGACA--CCGgAGCU-----GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.