miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23226 5' -57.1 NC_005259.1 + 29855 0.66 0.650718
Target:  5'- ---cUCGCUGUcgGGCaUCGAacugcCACCGCCc -3'
miRNA:   3'- auuaGGCGACA--CCGgAGCU-----GUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 51490 0.66 0.661448
Target:  5'- ---aCCGCcGgGGauaggUCGACGCCGCCg -3'
miRNA:   3'- auuaGGCGaCaCCgg---AGCUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 48383 0.66 0.661448
Target:  5'- -cGUCUGUUGUcguuGCCgcCGACGcCCGCCg -3'
miRNA:   3'- auUAGGCGACAc---CGGa-GCUGU-GGCGG- -5'
23226 5' -57.1 NC_005259.1 + 12272 0.66 0.661448
Target:  5'- -cAUCgCGUcGUGGaUCUC-ACGCCGCCg -3'
miRNA:   3'- auUAG-GCGaCACC-GGAGcUGUGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 12510 0.66 0.672152
Target:  5'- ---gCCGCUG-GGCCgcUCGGCuACCcguagaGCCg -3'
miRNA:   3'- auuaGGCGACaCCGG--AGCUG-UGG------CGG- -5'
23226 5' -57.1 NC_005259.1 + 67900 0.66 0.682819
Target:  5'- --uUCgGCUGUgGGUCUCGGCGagGUCa -3'
miRNA:   3'- auuAGgCGACA-CCGGAGCUGUggCGG- -5'
23226 5' -57.1 NC_005259.1 + 33296 0.66 0.682819
Target:  5'- -cAUCCacgGCUGcGG-CUCGAUcCCGCCg -3'
miRNA:   3'- auUAGG---CGACaCCgGAGCUGuGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 25168 0.66 0.682819
Target:  5'- ---cCCGUUG-GGUC-CGACccguacGCCGCCg -3'
miRNA:   3'- auuaGGCGACaCCGGaGCUG------UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 30129 0.66 0.682819
Target:  5'- -cGUCCgGCUGcgauaccucgGGCagCUCGACcggGCCGCCu -3'
miRNA:   3'- auUAGG-CGACa---------CCG--GAGCUG---UGGCGG- -5'
23226 5' -57.1 NC_005259.1 + 18748 0.66 0.69344
Target:  5'- ---gUCGUcgGUGGUgCUCGACAUgGCCu -3'
miRNA:   3'- auuaGGCGa-CACCG-GAGCUGUGgCGG- -5'
23226 5' -57.1 NC_005259.1 + 62618 0.66 0.69344
Target:  5'- gAcgCCGCaccGUGGCCa--GCACCGCa -3'
miRNA:   3'- aUuaGGCGa--CACCGGagcUGUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.