Results 61 - 71 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23226 | 5' | -57.1 | NC_005259.1 | + | 58288 | 0.68 | 0.533571 |
Target: 5'- aGGUUCGCga-GGCCagCgGAUACCGCCa -3' miRNA: 3'- aUUAGGCGacaCCGGa-G-CUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 58873 | 0.71 | 0.37983 |
Target: 5'- ---gUCGUcGUcGCCUCGGCAUCGCCg -3' miRNA: 3'- auuaGGCGaCAcCGGAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 59522 | 0.75 | 0.205516 |
Target: 5'- ---aUUGCUGuUGGCCUUaGCGCCGCCa -3' miRNA: 3'- auuaGGCGAC-ACCGGAGcUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 60137 | 0.71 | 0.362774 |
Target: 5'- -cGUCCuGCgc-GGCCUUGGcCGCCGCCu -3' miRNA: 3'- auUAGG-CGacaCCGGAGCU-GUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 60416 | 0.69 | 0.47269 |
Target: 5'- cGAUCUGCUcggggGUGGCCcaCGGgGCgGCCa -3' miRNA: 3'- aUUAGGCGA-----CACCGGa-GCUgUGgCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 62618 | 0.66 | 0.69344 |
Target: 5'- gAcgCCGCaccGUGGCCa--GCACCGCa -3' miRNA: 3'- aUuaGGCGa--CACCGGagcUGUGGCGg -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 64764 | 0.69 | 0.49262 |
Target: 5'- ---cUCGCgacgGUGcGCCUCGGCGgcCCGCUg -3' miRNA: 3'- auuaGGCGa---CAC-CGGAGCUGU--GGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 65784 | 0.68 | 0.52321 |
Target: 5'- cAGUgCGCcaUGGCCUCGACG-CGCUg -3' miRNA: 3'- aUUAgGCGacACCGGAGCUGUgGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 67144 | 0.72 | 0.322508 |
Target: 5'- ---aCCGCUGUGaGCCgcuugUCGAUgguggcggccauGCCGCCg -3' miRNA: 3'- auuaGGCGACAC-CGG-----AGCUG------------UGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 67209 | 0.69 | 0.502729 |
Target: 5'- ---gCCGCUGUcGGCggggUCGAUGCCGaCCa -3' miRNA: 3'- auuaGGCGACA-CCGg---AGCUGUGGC-GG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 67900 | 0.66 | 0.682819 |
Target: 5'- --uUCgGCUGUgGGUCUCGGCGagGUCa -3' miRNA: 3'- auuAGgCGACA-CCGGAGCUGUggCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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