Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23226 | 5' | -57.1 | NC_005259.1 | + | 30102 | 0.68 | 0.52321 |
Target: 5'- -cGUCggaGCUGUGuGCaUCGGCAUUGCCg -3' miRNA: 3'- auUAGg--CGACAC-CGgAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 29855 | 0.66 | 0.650718 |
Target: 5'- ---cUCGCUGUcgGGCaUCGAacugcCACCGCCc -3' miRNA: 3'- auuaGGCGACA--CCGgAGCU-----GUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 28574 | 0.71 | 0.397413 |
Target: 5'- ---cCCGCcaccGCCUCuGACGCCGCCa -3' miRNA: 3'- auuaGGCGacacCGGAG-CUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 28145 | 0.72 | 0.330287 |
Target: 5'- cGAUgaGCUGcccGGCCUCGACgcGCUGCCc -3' miRNA: 3'- aUUAggCGACa--CCGGAGCUG--UGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 26772 | 0.71 | 0.388556 |
Target: 5'- aUGAUgCCGCcgGU-GCCUCGgaacaccaGCGCCGCCg -3' miRNA: 3'- -AUUA-GGCGa-CAcCGGAGC--------UGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 26123 | 0.71 | 0.362774 |
Target: 5'- ---gCCGCcgGUcGCCggucCGACGCCGCCg -3' miRNA: 3'- auuaGGCGa-CAcCGGa---GCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 26046 | 0.67 | 0.597012 |
Target: 5'- aGcgCCGCcggGuUGGCCaUGcCGCCGCCg -3' miRNA: 3'- aUuaGGCGa--C-ACCGGaGCuGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 25168 | 0.66 | 0.682819 |
Target: 5'- ---cCCGUUG-GGUC-CGACccguacGCCGCCg -3' miRNA: 3'- auuaGGCGACaCCGGaGCUG------UGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 24555 | 0.67 | 0.62922 |
Target: 5'- aGAUCgGCgggGUGuaCUCGuggGCACCGCa -3' miRNA: 3'- aUUAGgCGa--CACcgGAGC---UGUGGCGg -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 23886 | 0.71 | 0.397413 |
Target: 5'- -uAUCCGCUGccGCC-CGA-GCCGCCg -3' miRNA: 3'- auUAGGCGACacCGGaGCUgUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 23636 | 0.72 | 0.322508 |
Target: 5'- ---cUCGgUGUGGUUUCGGC-CCGCCg -3' miRNA: 3'- auuaGGCgACACCGGAGCUGuGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 23463 | 0.7 | 0.453175 |
Target: 5'- --uUUCGCacggGGCCUCGGCAUUGUCg -3' miRNA: 3'- auuAGGCGaca-CCGGAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 22981 | 0.67 | 0.575669 |
Target: 5'- ---cUCGUgcccGGUgUCGACGCCGCCg -3' miRNA: 3'- auuaGGCGaca-CCGgAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 21574 | 0.71 | 0.37983 |
Target: 5'- ---aCUGCgagGUcgauuGGCCaugCGACACCGCCa -3' miRNA: 3'- auuaGGCGa--CA-----CCGGa--GCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 20476 | 0.76 | 0.200233 |
Target: 5'- ---aCCGCcGUcGaCCUCGACACCGCCc -3' miRNA: 3'- auuaGGCGaCAcC-GGAGCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 19849 | 0.68 | 0.52321 |
Target: 5'- ---gCCGCgcucggUGUGGCgCUCG-CGcCCGCCg -3' miRNA: 3'- auuaGGCG------ACACCG-GAGCuGU-GGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 18748 | 0.66 | 0.69344 |
Target: 5'- ---gUCGUcgGUGGUgCUCGACAUgGCCu -3' miRNA: 3'- auuaGGCGa-CACCG-GAGCUGUGgCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 18613 | 0.68 | 0.565059 |
Target: 5'- cAGUCCGCacagcgGUGuGCCgCG-CAUCGCCc -3' miRNA: 3'- aUUAGGCGa-----CAC-CGGaGCuGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 17373 | 0.69 | 0.49262 |
Target: 5'- ----gCGCUggucGUGGUCgacugCGACACUGCCg -3' miRNA: 3'- auuagGCGA----CACCGGa----GCUGUGGCGG- -5' |
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23226 | 5' | -57.1 | NC_005259.1 | + | 15210 | 0.71 | 0.388556 |
Target: 5'- ----aUGCUGUGGCgCUCGGCGCuCGgCa -3' miRNA: 3'- auuagGCGACACCG-GAGCUGUG-GCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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