Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23227 | 5' | -55.7 | NC_005259.1 | + | 68786 | 0.68 | 0.670274 |
Target: 5'- -aGCAGGUcguacgccgggGCGGUgucgGUGCCCG-GUACa -3' miRNA: 3'- cgCGUUCA-----------UGCCAg---CACGGGCgCAUG- -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 56914 | 0.66 | 0.733491 |
Target: 5'- cCGCAGca--GG-CGUGCCCGCGUc- -3' miRNA: 3'- cGCGUUcaugCCaGCACGGGCGCAug -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 55764 | 0.67 | 0.702177 |
Target: 5'- uGCGCAGccgcGUACGcGUCGagcucgGCCCGCu--- -3' miRNA: 3'- -CGCGUU----CAUGC-CAGCa-----CGGGCGcaug -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 50162 | 0.66 | 0.74375 |
Target: 5'- cGCGUGAGcgaGCGGUgGaaUGCCCGCa--- -3' miRNA: 3'- -CGCGUUCa--UGCCAgC--ACGGGCGcaug -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 49985 | 0.69 | 0.605801 |
Target: 5'- cGCGCAcggaucgcGUGCGGaCGgcUGCCCuCGUGCa -3' miRNA: 3'- -CGCGUu-------CAUGCCaGC--ACGGGcGCAUG- -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 49891 | 0.87 | 0.042237 |
Target: 5'- uGCGCAugaa-GGUCGUGCCCGCGUACc -3' miRNA: 3'- -CGCGUucaugCCAGCACGGGCGCAUG- -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 45971 | 0.67 | 0.712694 |
Target: 5'- uGC-CGAGcuugGCGaGU-GUGUCCGCGUACa -3' miRNA: 3'- -CGcGUUCa---UGC-CAgCACGGGCGCAUG- -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 45080 | 0.66 | 0.773834 |
Target: 5'- cUGUuGGUGCuGUCGagcgUGCCCGUGUAg -3' miRNA: 3'- cGCGuUCAUGcCAGC----ACGGGCGCAUg -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 41656 | 0.69 | 0.59508 |
Target: 5'- gGCGCucGGUgaGCGGgaucUGCaCCGCGUGCg -3' miRNA: 3'- -CGCGu-UCA--UGCCagc-ACG-GGCGCAUG- -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 37976 | 0.67 | 0.712694 |
Target: 5'- -gGC-AGUGC-GUCGUacugcGCCUGCGUGCc -3' miRNA: 3'- cgCGuUCAUGcCAGCA-----CGGGCGCAUG- -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 24247 | 0.67 | 0.680956 |
Target: 5'- aCGCGAGUuCGGcgagugCGUGCaCGCGUGg -3' miRNA: 3'- cGCGUUCAuGCCa-----GCACGgGCGCAUg -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 21955 | 0.68 | 0.648817 |
Target: 5'- gGCGCAAGg-----CGUGaCCCGCGUGg -3' miRNA: 3'- -CGCGUUCaugccaGCAC-GGGCGCAUg -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 21249 | 0.68 | 0.616545 |
Target: 5'- cGCGCGGGUucuggaaagcccAUGGUCGUcgGCCUGaCGaGCa -3' miRNA: 3'- -CGCGUUCA------------UGCCAGCA--CGGGC-GCaUG- -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 14841 | 0.74 | 0.336613 |
Target: 5'- aCGCAucGUggacACGGUCGUGCUCGCGa-- -3' miRNA: 3'- cGCGUu-CA----UGCCAGCACGGGCGCaug -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 14463 | 0.69 | 0.581188 |
Target: 5'- uGUGCGGGUGCcuucacgcucguGGUCcgauccgcugcucgGUGCCCGCaUGCa -3' miRNA: 3'- -CGCGUUCAUG------------CCAG--------------CACGGGCGcAUG- -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 14091 | 0.69 | 0.584388 |
Target: 5'- uGCGCAgcgaggucgagGGUGCGGaaaCGcaUGCCauCGCGUGCa -3' miRNA: 3'- -CGCGU-----------UCAUGCCa--GC--ACGG--GCGCAUG- -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 9126 | 0.73 | 0.352814 |
Target: 5'- cGCGCcccGGUACGGgcagccgugcUCGUGCCCGuCG-ACg -3' miRNA: 3'- -CGCGu--UCAUGCC----------AGCACGGGC-GCaUG- -5' |
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23227 | 5' | -55.7 | NC_005259.1 | + | 4628 | 0.74 | 0.320961 |
Target: 5'- gGCGCGAGUucUGGauaGUGCCCGCGcACc -3' miRNA: 3'- -CGCGUUCAu-GCCag-CACGGGCGCaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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