miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 30096 0.76 0.368279
Target:  5'- cGCCcUCGUCGGagcugugUGCAUCGGCAuUGCc -3'
miRNA:   3'- -CGGuGGCAGCCa------AUGUAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 30550 0.7 0.72468
Target:  5'- gGCCACCGagCGGUUguugacgcccuugGCcgCaGUAGCGCu -3'
miRNA:   3'- -CGGUGGCa-GCCAA-------------UGuaGcCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 31379 0.66 0.909354
Target:  5'- cGUC-CCGUagcacccCGGUgACAUCGGagcaCAGCGCc -3'
miRNA:   3'- -CGGuGGCA-------GCCAaUGUAGCC----GUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 32389 0.66 0.903452
Target:  5'- cCCGCCGUCGcg-AUAgcUCGGCucacACGUa -3'
miRNA:   3'- cGGUGGCAGCcaaUGU--AGCCGu---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 33226 0.69 0.763852
Target:  5'- uGCCGCCGcCGGUcaccGCGUaCGugccagaucugcccGCAGCGCc -3'
miRNA:   3'- -CGGUGGCaGCCAa---UGUA-GC--------------CGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 33317 0.67 0.858787
Target:  5'- cCCGCCGUCGG------CGGUcACGCg -3'
miRNA:   3'- cGGUGGCAGCCaauguaGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 34025 0.67 0.858787
Target:  5'- gGCC-UCGgCGGcgUGCGUCGGC-GCGUu -3'
miRNA:   3'- -CGGuGGCaGCCa-AUGUAGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 34360 0.71 0.62888
Target:  5'- cCCACCGcCGGU---AUCGGCGcguaaccucgacGCGCa -3'
miRNA:   3'- cGGUGGCaGCCAaugUAGCCGU------------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 34548 0.67 0.866053
Target:  5'- aGCCucagcuuGCCGUCGGggcCGaCGGCGAgGUu -3'
miRNA:   3'- -CGG-------UGGCAGCCaauGUaGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 35666 0.66 0.909997
Target:  5'- gGCCAgCG-CGGUgguggUGCA-CaGCGACGCc -3'
miRNA:   3'- -CGGUgGCaGCCA-----AUGUaGcCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 36238 0.76 0.359764
Target:  5'- gGCCAgCGcgagCGccUGCGUCGGCAGCGCc -3'
miRNA:   3'- -CGGUgGCa---GCcaAUGUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 36782 0.74 0.466606
Target:  5'- uGCCGCCGUCcugaccgcucGCGUCGGCAuuguugaccgGCGCg -3'
miRNA:   3'- -CGGUGGCAGccaa------UGUAGCCGU----------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 37477 0.67 0.866848
Target:  5'- cGCCGCCGUUGGcugACccaccccCGGCGGugaGCa -3'
miRNA:   3'- -CGGUGGCAGCCaa-UGua-----GCCGUUg--CG- -5'
23228 5' -52.9 NC_005259.1 + 37660 0.66 0.903452
Target:  5'- cGCCGCCGcCGGUgccGCcacgGUUGGUGuaugugcccGCGCc -3'
miRNA:   3'- -CGGUGGCaGCCAa--UG----UAGCCGU---------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 37955 0.7 0.683129
Target:  5'- -aUACCGuUCGGgcucUugGUCGGCAGUGCg -3'
miRNA:   3'- cgGUGGC-AGCCa---AugUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 40143 0.73 0.511236
Target:  5'- aGCuCGCCGUCGGUU--GUCGGUgccCGCc -3'
miRNA:   3'- -CG-GUGGCAGCCAAugUAGCCGuu-GCG- -5'
23228 5' -52.9 NC_005259.1 + 40217 0.72 0.574687
Target:  5'- uGCUgcuuGCCGUUGGUcGCGUCGaGCAACu- -3'
miRNA:   3'- -CGG----UGGCAGCCAaUGUAGC-CGUUGcg -5'
23228 5' -52.9 NC_005259.1 + 40888 0.82 0.181762
Target:  5'- gGCCACCGU-GGcgGgGUCGGCAGCGUc -3'
miRNA:   3'- -CGGUGGCAgCCaaUgUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 41598 0.67 0.87467
Target:  5'- gGUCGCgCGUCGGUguu-UCGGau-CGCg -3'
miRNA:   3'- -CGGUG-GCAGCCAauguAGCCguuGCG- -5'
23228 5' -52.9 NC_005259.1 + 43091 0.66 0.909997
Target:  5'- uGCCGCCGaacagucccgUGGUcAgGUCuGGCAGCaGCg -3'
miRNA:   3'- -CGGUGGCa---------GCCAaUgUAG-CCGUUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.