miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 17024 0.66 0.882247
Target:  5'- cGCCAUCcUCGGcgcugGCAUCGaCAACcGCg -3'
miRNA:   3'- -CGGUGGcAGCCaa---UGUAGCcGUUG-CG- -5'
23228 5' -52.9 NC_005259.1 + 17348 0.71 0.639764
Target:  5'- cGUCGCCGUCG---AgGUCGGCGgcucgGCGCu -3'
miRNA:   3'- -CGGUGGCAGCcaaUgUAGCCGU-----UGCG- -5'
23228 5' -52.9 NC_005259.1 + 17469 0.66 0.889573
Target:  5'- cCCACCGU-GGUgACGccCGGCcAUGCg -3'
miRNA:   3'- cGGUGGCAgCCAaUGUa-GCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 18729 0.73 0.553274
Target:  5'- gGCCGCCcggcaUCGGUaaguCGUCGGUggUGCu -3'
miRNA:   3'- -CGGUGGc----AGCCAau--GUAGCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 19059 0.73 0.532105
Target:  5'- cGCCACCGaugUCGGUgucGCGgucCGGCGcuacgacaagcuGCGCg -3'
miRNA:   3'- -CGGUGGC---AGCCAa--UGUa--GCCGU------------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 20111 0.67 0.87467
Target:  5'- aGCCGCCGUCucaaGGccGCAcUGGCugccguCGCg -3'
miRNA:   3'- -CGGUGGCAG----CCaaUGUaGCCGuu----GCG- -5'
23228 5' -52.9 NC_005259.1 + 20476 0.7 0.687435
Target:  5'- aCCGCCGUCGaccucgacaccgcccGgcagcuCAUCGGCGACGg -3'
miRNA:   3'- cGGUGGCAGC---------------Caau---GUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 21166 0.69 0.735139
Target:  5'- cGUCACCGacggcagUCGGgu-CAUCGGCGcgaGCa -3'
miRNA:   3'- -CGGUGGC-------AGCCaauGUAGCCGUug-CG- -5'
23228 5' -52.9 NC_005259.1 + 22385 0.69 0.776845
Target:  5'- aGCC-CgGUCGGcc---UCGGCGACGUg -3'
miRNA:   3'- -CGGuGgCAGCCaauguAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 22639 0.69 0.760821
Target:  5'- cGCCG-CGUCGGUcgacgccgcccaccACAUCGcCGACGCa -3'
miRNA:   3'- -CGGUgGCAGCCAa-------------UGUAGCcGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 23325 0.68 0.81517
Target:  5'- uGUCGCCGagcCGGaUUACAUCGGgcuCGAgGCu -3'
miRNA:   3'- -CGGUGGCa--GCC-AAUGUAGCC---GUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 23912 0.72 0.596284
Target:  5'- cCCGCCGUCGaaaUACAacggUCGGCAccaguacauguuGCGCa -3'
miRNA:   3'- cGGUGGCAGCca-AUGU----AGCCGU------------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 24595 0.66 0.88
Target:  5'- cGCUACCGgugaCGGUUgggaACGuaugcccaagcucaUCGGCAuccCGCa -3'
miRNA:   3'- -CGGUGGCa---GCCAA----UGU--------------AGCCGUu--GCG- -5'
23228 5' -52.9 NC_005259.1 + 25923 0.69 0.73618
Target:  5'- cGCCGCCGcCGGUc----CGGUgAGCGCa -3'
miRNA:   3'- -CGGUGGCaGCCAauguaGCCG-UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 26119 0.72 0.585466
Target:  5'- cGCCGCCGcCGGUcGC--CGGUccGACGCc -3'
miRNA:   3'- -CGGUGGCaGCCAaUGuaGCCG--UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 26801 0.68 0.823401
Target:  5'- cGCCGCCGccCGGUuggccggUACcggCGGUggUGCc -3'
miRNA:   3'- -CGGUGGCa-GCCA-------AUGua-GCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 27162 0.66 0.889573
Target:  5'- gGCCaacgauGCCGUCGGcgaugaGCAggCuGCGACGCu -3'
miRNA:   3'- -CGG------UGGCAGCCaa----UGUa-GcCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 27385 0.69 0.73618
Target:  5'- gGUgACCGgcggCGGU---GUCGGCAGCGg -3'
miRNA:   3'- -CGgUGGCa---GCCAaugUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 27748 0.66 0.889573
Target:  5'- uGCUGCCcaCGG-UGCAucgcccUCGGCGACGa -3'
miRNA:   3'- -CGGUGGcaGCCaAUGU------AGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 28229 0.72 0.618
Target:  5'- cGCCACCGUCGG------CGGCGGgGUg -3'
miRNA:   3'- -CGGUGGCAGCCaauguaGCCGUUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.