miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 179 0.67 0.850494
Target:  5'- aCCACCGacUCGGU--CAUCuauGGCGcgugGCGCg -3'
miRNA:   3'- cGGUGGC--AGCCAauGUAG---CCGU----UGCG- -5'
23228 5' -52.9 NC_005259.1 + 2087 0.66 0.889573
Target:  5'- gGCCugC-UCGaUUuCAUCGGCGAgGCc -3'
miRNA:   3'- -CGGugGcAGCcAAuGUAGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 2235 0.69 0.776845
Target:  5'- cGCCAuUUGUCGGcgACAgccgguaCGGCGACGa -3'
miRNA:   3'- -CGGU-GGCAGCCaaUGUa------GCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 3289 0.67 0.850494
Target:  5'- cGCCGCCucGcCGGUccC-UCGGCgAGCGCu -3'
miRNA:   3'- -CGGUGG--CaGCCAauGuAGCCG-UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 4503 0.66 0.889573
Target:  5'- cGCCACCGcgcCGGgag---UGGCGcuGCGCg -3'
miRNA:   3'- -CGGUGGCa--GCCaauguaGCCGU--UGCG- -5'
23228 5' -52.9 NC_005259.1 + 4609 0.69 0.776845
Target:  5'- gGCaCGCUGUCGGgc----CGGUGGCGCg -3'
miRNA:   3'- -CG-GUGGCAGCCaauguaGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 6121 0.68 0.81517
Target:  5'- gGCCGCCGcuacgCGGgcACu---GCAACGCg -3'
miRNA:   3'- -CGGUGGCa----GCCaaUGuagcCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 6442 0.73 0.553274
Target:  5'- cGgCACCGUCGcGcUG-AUCGGCAGCGUc -3'
miRNA:   3'- -CgGUGGCAGC-CaAUgUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 7420 0.75 0.416596
Target:  5'- cGUCGCCGUCGGcggugcccgcgccGCAU-GGCAGCGCc -3'
miRNA:   3'- -CGGUGGCAGCCaa-----------UGUAgCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 7921 0.67 0.850494
Target:  5'- uGCCGCCcUUGGUcuCGUgGGCcuucuuGCGCg -3'
miRNA:   3'- -CGGUGGcAGCCAauGUAgCCGu-----UGCG- -5'
23228 5' -52.9 NC_005259.1 + 8352 0.69 0.766871
Target:  5'- cGCUGCUGcCGGUaucGC-UCGGCGGCGg -3'
miRNA:   3'- -CGGUGGCaGCCAa--UGuAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 10322 0.68 0.833245
Target:  5'- cGUCAUCGggcUCGGcgACGggcUCGGCGGCaGCg -3'
miRNA:   3'- -CGGUGGC---AGCCaaUGU---AGCCGUUG-CG- -5'
23228 5' -52.9 NC_005259.1 + 11548 0.67 0.850494
Target:  5'- uGCCGCaCGUCaGGcggacaUUugAUCGGUAGCa- -3'
miRNA:   3'- -CGGUG-GCAG-CC------AAugUAGCCGUUGcg -5'
23228 5' -52.9 NC_005259.1 + 12291 0.66 0.882247
Target:  5'- cGCCGCCGcgccucgaugCGGgcaAUGUCGGUG-CGCa -3'
miRNA:   3'- -CGGUGGCa---------GCCaa-UGUAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 12679 0.66 0.903452
Target:  5'- -aCACCGUCGGaugACGagGGagaGugGCu -3'
miRNA:   3'- cgGUGGCAGCCaa-UGUagCCg--UugCG- -5'
23228 5' -52.9 NC_005259.1 + 12985 0.67 0.873899
Target:  5'- cCCACCGU-GGUgcucGCGuucgcacUCGGCuACGCc -3'
miRNA:   3'- cGGUGGCAgCCAa---UGU-------AGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 13098 0.67 0.858787
Target:  5'- uGCCACCGacccCGGcccGC-UCGGCGgcuacgaccaGCGCa -3'
miRNA:   3'- -CGGUGGCa---GCCaa-UGuAGCCGU----------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 13429 0.68 0.833245
Target:  5'- cGCCGCCGgggccgCGcuaggcGUgacCGUCGGCGcgGCGCu -3'
miRNA:   3'- -CGGUGGCa-----GC------CAau-GUAGCCGU--UGCG- -5'
23228 5' -52.9 NC_005259.1 + 14493 0.66 0.896643
Target:  5'- uCCGCUGcUCGGUgcccGCAUgcacacCGGCGagcACGCg -3'
miRNA:   3'- cGGUGGC-AGCCAa---UGUA------GCCGU---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 16449 0.7 0.715189
Target:  5'- gGgCACCGUCGG---CAUCGGUAcccCGCc -3'
miRNA:   3'- -CgGUGGCAGCCaauGUAGCCGUu--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.