miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 68540 0.71 0.672333
Target:  5'- cGCCACgCGUCG---ACAUCGGgGugGUu -3'
miRNA:   3'- -CGGUG-GCAGCcaaUGUAGCCgUugCG- -5'
23228 5' -52.9 NC_005259.1 + 68298 0.67 0.841978
Target:  5'- -aCAUCGggaUCGGgcGCGUcCGGCGACGg -3'
miRNA:   3'- cgGUGGC---AGCCaaUGUA-GCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 67773 0.72 0.563953
Target:  5'- gGCCACCGaccacgCGGUgACcuuGUUGGCAcCGCg -3'
miRNA:   3'- -CGGUGGCa-----GCCAaUG---UAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 67208 0.68 0.786672
Target:  5'- cGCCGCUGUCGGcgGgGUcgaugccgaccaCGGCggUGUa -3'
miRNA:   3'- -CGGUGGCAGCCaaUgUA------------GCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 66886 0.66 0.882991
Target:  5'- cGCCACgGcuugaucgugaacggCGG-UAgAUcCGGCAGCGCg -3'
miRNA:   3'- -CGGUGgCa--------------GCCaAUgUA-GCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 66639 0.81 0.207517
Target:  5'- gGCCACCGcUCGGaUUGCugccgGUCGGCggUGCu -3'
miRNA:   3'- -CGGUGGC-AGCC-AAUG-----UAGCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 66137 0.7 0.704568
Target:  5'- gGCCAUCaGaCGGcgUGCGUUGGCAuccuguguGCGCg -3'
miRNA:   3'- -CGGUGG-CaGCCa-AUGUAGCCGU--------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 65120 0.75 0.450879
Target:  5'- cGUCACCGUCGGc-GCAcCGGCGGC-Ca -3'
miRNA:   3'- -CGGUGGCAGCCaaUGUaGCCGUUGcG- -5'
23228 5' -52.9 NC_005259.1 + 64132 0.72 0.574687
Target:  5'- cGCCugACCGagCGGcc-CGUCGGCGAUGCc -3'
miRNA:   3'- -CGG--UGGCa-GCCaauGUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 62882 0.67 0.866848
Target:  5'- gGCCGC--UCGGU--CAUUGaGCGACGCc -3'
miRNA:   3'- -CGGUGgcAGCCAauGUAGC-CGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 61911 0.68 0.824306
Target:  5'- gGUCGCCgGUCGu---CGUCGGCAgcucggucucucGCGCg -3'
miRNA:   3'- -CGGUGG-CAGCcaauGUAGCCGU------------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 61392 0.66 0.903452
Target:  5'- cGCCcgauGCCGUCGGUguccucgcggGCA-CGGaCAACa- -3'
miRNA:   3'- -CGG----UGGCAGCCAa---------UGUaGCC-GUUGcg -5'
23228 5' -52.9 NC_005259.1 + 61164 0.71 0.65064
Target:  5'- -aCACCGaCGGUgUACGccUCGGUAugGCc -3'
miRNA:   3'- cgGUGGCaGCCA-AUGU--AGCCGUugCG- -5'
23228 5' -52.9 NC_005259.1 + 60798 0.66 0.909354
Target:  5'- aGCCGcguacacCCGaggcCGGaaauCGUCGGCGAUGCu -3'
miRNA:   3'- -CGGU-------GGCa---GCCaau-GUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 60379 0.66 0.909997
Target:  5'- cGCCaAUCGcCGG--ACAgCGGCGAgGCg -3'
miRNA:   3'- -CGG-UGGCaGCCaaUGUaGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 60153 0.67 0.866848
Target:  5'- gGCCGCCGccucagCGGccucACGggCGGCgAACGCc -3'
miRNA:   3'- -CGGUGGCa-----GCCaa--UGUa-GCCG-UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 58962 0.73 0.532105
Target:  5'- gGCCAgCagGUCGGgcagcuCGUCGGCGACGg -3'
miRNA:   3'- -CGGUgG--CAGCCaau---GUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 58862 0.68 0.786672
Target:  5'- gGCuCGCCGUCGucgucGUcGCcUCGGCAuCGCc -3'
miRNA:   3'- -CG-GUGGCAGC-----CAaUGuAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 58710 0.69 0.766871
Target:  5'- cGCCGCCGUCaccaucgccgggGGUguCGUUGGCAcCGg -3'
miRNA:   3'- -CGGUGGCAG------------CCAauGUAGCCGUuGCg -5'
23228 5' -52.9 NC_005259.1 + 57426 0.66 0.896643
Target:  5'- uGCUACCGgcUCGcUUACG-CGGCGAgGUu -3'
miRNA:   3'- -CGGUGGC--AGCcAAUGUaGCCGUUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.