miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 48946 1.13 0.001433
Target:  5'- gGCCACCGUCGGUUACAUCGGCAACGCc -3'
miRNA:   3'- -CGGUGGCAGCCAAUGUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 40888 0.82 0.181762
Target:  5'- gGCCACCGU-GGcgGgGUCGGCAGCGUc -3'
miRNA:   3'- -CGGUGGCAgCCaaUgUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 66639 0.81 0.207517
Target:  5'- gGCCACCGcUCGGaUUGCugccgGUCGGCggUGCu -3'
miRNA:   3'- -CGGUGGC-AGCC-AAUG-----UAGCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 52963 0.79 0.2685
Target:  5'- cGCCGCUGccCGGcUGCAUCGGCAA-GCa -3'
miRNA:   3'- -CGGUGGCa-GCCaAUGUAGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 36238 0.76 0.359764
Target:  5'- gGCCAgCGcgagCGccUGCGUCGGCAGCGCc -3'
miRNA:   3'- -CGGUgGCa---GCcaAUGUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 30096 0.76 0.368279
Target:  5'- cGCCcUCGUCGGagcugugUGCAUCGGCAuUGCc -3'
miRNA:   3'- -CGGuGGCAGCCa------AUGUAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 7420 0.75 0.416596
Target:  5'- cGUCGCCGUCGGcggugcccgcgccGCAU-GGCAGCGCc -3'
miRNA:   3'- -CGGUGGCAGCCaa-----------UGUAgCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 65120 0.75 0.450879
Target:  5'- cGUCACCGUCGGc-GCAcCGGCGGC-Ca -3'
miRNA:   3'- -CGGUGGCAGCCaaUGUaGCCGUUGcG- -5'
23228 5' -52.9 NC_005259.1 + 36782 0.74 0.466606
Target:  5'- uGCCGCCGUCcugaccgcucGCGUCGGCAuuguugaccgGCGCg -3'
miRNA:   3'- -CGGUGGCAGccaa------UGUAGCCGU----------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 44398 0.74 0.480596
Target:  5'- cGCCGagcaCGUCGGUgcccGCcugacCGGCAGCGCc -3'
miRNA:   3'- -CGGUg---GCAGCCAa---UGua---GCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 50307 0.74 0.490713
Target:  5'- uGCCACuCGUCG--UAC-UCGGCAACGa -3'
miRNA:   3'- -CGGUG-GCAGCcaAUGuAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 48433 0.74 0.490713
Target:  5'- aCCACCGaggCGcGagGCAgCGGCAGCGCg -3'
miRNA:   3'- cGGUGGCa--GC-CaaUGUaGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 40143 0.73 0.511236
Target:  5'- aGCuCGCCGUCGGUU--GUCGGUgccCGCc -3'
miRNA:   3'- -CG-GUGGCAGCCAAugUAGCCGuu-GCG- -5'
23228 5' -52.9 NC_005259.1 + 51741 0.73 0.52163
Target:  5'- gGCCACCGccacgcucUCGGcagcgUUGCGcUCGGCgAGCGCc -3'
miRNA:   3'- -CGGUGGC--------AGCC-----AAUGU-AGCCG-UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 19059 0.73 0.532105
Target:  5'- cGCCACCGaugUCGGUgucGCGgucCGGCGcuacgacaagcuGCGCg -3'
miRNA:   3'- -CGGUGGC---AGCCAa--UGUa--GCCGU------------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 58962 0.73 0.532105
Target:  5'- gGCCAgCagGUCGGgcagcuCGUCGGCGACGg -3'
miRNA:   3'- -CGGUgG--CAGCCaau---GUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 18729 0.73 0.553274
Target:  5'- gGCCGCCcggcaUCGGUaaguCGUCGGUggUGCu -3'
miRNA:   3'- -CGGUGGc----AGCCAau--GUAGCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 6442 0.73 0.553274
Target:  5'- cGgCACCGUCGcGcUG-AUCGGCAGCGUc -3'
miRNA:   3'- -CgGUGGCAGC-CaAUgUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 67773 0.72 0.563953
Target:  5'- gGCCACCGaccacgCGGUgACcuuGUUGGCAcCGCg -3'
miRNA:   3'- -CGGUGGCa-----GCCAaUG---UAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 64132 0.72 0.574687
Target:  5'- cGCCugACCGagCGGcc-CGUCGGCGAUGCc -3'
miRNA:   3'- -CGG--UGGCa-GCCaauGUAGCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.