miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 40217 0.72 0.574687
Target:  5'- uGCUgcuuGCCGUUGGUcGCGUCGaGCAACu- -3'
miRNA:   3'- -CGG----UGGCAGCCAaUGUAGC-CGUUGcg -5'
23228 5' -52.9 NC_005259.1 + 26119 0.72 0.585466
Target:  5'- cGCCGCCGcCGGUcGC--CGGUccGACGCc -3'
miRNA:   3'- -CGGUGGCaGCCAaUGuaGCCG--UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 52769 0.72 0.585466
Target:  5'- --aGCuCGUCGGU---GUCGGCAGCGUg -3'
miRNA:   3'- cggUG-GCAGCCAaugUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 23912 0.72 0.596284
Target:  5'- cCCGCCGUCGaaaUACAacggUCGGCAccaguacauguuGCGCa -3'
miRNA:   3'- cGGUGGCAGCca-AUGU----AGCCGU------------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 50751 0.72 0.616912
Target:  5'- aGCCGCCacgcgguGUCGGacgACAccUCGGCcuCGCg -3'
miRNA:   3'- -CGGUGG-------CAGCCaa-UGU--AGCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 28229 0.72 0.618
Target:  5'- cGCCACCGUCGG------CGGCGGgGUg -3'
miRNA:   3'- -CGGUGGCAGCCaauguaGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 34360 0.71 0.62888
Target:  5'- cCCACCGcCGGU---AUCGGCGcguaaccucgacGCGCa -3'
miRNA:   3'- cGGUGGCaGCCAaugUAGCCGU------------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 46323 0.71 0.62888
Target:  5'- gGCC-CCGagGGUcGCGUCGcGCAcCGCu -3'
miRNA:   3'- -CGGuGGCagCCAaUGUAGC-CGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 51659 0.71 0.639764
Target:  5'- gGUUGCCGcgCGGgcGCGUCGgGCAcggGCGCg -3'
miRNA:   3'- -CGGUGGCa-GCCaaUGUAGC-CGU---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 17348 0.71 0.639764
Target:  5'- cGUCGCCGUCG---AgGUCGGCGgcucgGCGCu -3'
miRNA:   3'- -CGGUGGCAGCcaaUgUAGCCGU-----UGCG- -5'
23228 5' -52.9 NC_005259.1 + 61164 0.71 0.65064
Target:  5'- -aCACCGaCGGUgUACGccUCGGUAugGCc -3'
miRNA:   3'- cgGUGGCaGCCA-AUGU--AGCCGUugCG- -5'
23228 5' -52.9 NC_005259.1 + 48464 0.71 0.672333
Target:  5'- uCCACCGcgcgcCGGgucGCGUCGGCcuguuccucGACGCg -3'
miRNA:   3'- cGGUGGCa----GCCaa-UGUAGCCG---------UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 54486 0.71 0.672333
Target:  5'- cCCGCCGagGGU--CAUCGGCGG-GCa -3'
miRNA:   3'- cGGUGGCagCCAauGUAGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 68540 0.71 0.672333
Target:  5'- cGCCACgCGUCG---ACAUCGGgGugGUu -3'
miRNA:   3'- -CGGUG-GCAGCcaaUGUAGCCgUugCG- -5'
23228 5' -52.9 NC_005259.1 + 37955 0.7 0.683129
Target:  5'- -aUACCGuUCGGgcucUugGUCGGCAGUGCg -3'
miRNA:   3'- cgGUGGC-AGCCa---AugUAGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 50650 0.7 0.683129
Target:  5'- cGCCGCCcUCGGggcCAUagGGCAccaGCGCg -3'
miRNA:   3'- -CGGUGGcAGCCaauGUAg-CCGU---UGCG- -5'
23228 5' -52.9 NC_005259.1 + 20476 0.7 0.687435
Target:  5'- aCCGCCGUCGaccucgacaccgcccGgcagcuCAUCGGCGACGg -3'
miRNA:   3'- cGGUGGCAGC---------------Caau---GUAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 44245 0.7 0.693878
Target:  5'- cGCCGCCcgcgcgcgagaaGUCGGcgACAUCgaGGCcgAACGCc -3'
miRNA:   3'- -CGGUGG------------CAGCCaaUGUAG--CCG--UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 51133 0.7 0.693878
Target:  5'- aUCACCGUCGGgg----CGGCcaugAGCGCg -3'
miRNA:   3'- cGGUGGCAGCCaauguaGCCG----UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 66137 0.7 0.704568
Target:  5'- gGCCAUCaGaCGGcgUGCGUUGGCAuccuguguGCGCg -3'
miRNA:   3'- -CGGUGG-CaGCCa-AUGUAGCCGU--------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.