miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 12291 0.66 0.882247
Target:  5'- cGCCGCCGcgccucgaugCGGgcaAUGUCGGUG-CGCa -3'
miRNA:   3'- -CGGUGGCa---------GCCaa-UGUAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 17024 0.66 0.882247
Target:  5'- cGCCAUCcUCGGcgcugGCAUCGaCAACcGCg -3'
miRNA:   3'- -CGGUGGcAGCCaa---UGUAGCcGUUG-CG- -5'
23228 5' -52.9 NC_005259.1 + 24595 0.66 0.88
Target:  5'- cGCUACCGgugaCGGUUgggaACGuaugcccaagcucaUCGGCAuccCGCa -3'
miRNA:   3'- -CGGUGGCa---GCCAA----UGU--------------AGCCGUu--GCG- -5'
23228 5' -52.9 NC_005259.1 + 47168 0.67 0.87467
Target:  5'- aUCACCGUagCGGcgaAgGUCGGCggUGCc -3'
miRNA:   3'- cGGUGGCA--GCCaa-UgUAGCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 56926 0.67 0.87467
Target:  5'- uGCC-CgCGUCGGUgagcaUGCGgUUGGCGAacuCGCg -3'
miRNA:   3'- -CGGuG-GCAGCCA-----AUGU-AGCCGUU---GCG- -5'
23228 5' -52.9 NC_005259.1 + 46948 0.67 0.87467
Target:  5'- cGCCGCCGacCGcGUUGagcuuGUUGGCcACGCc -3'
miRNA:   3'- -CGGUGGCa-GC-CAAUg----UAGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 46650 0.67 0.87467
Target:  5'- gGCCACaCGgcugCGGUUGagguucUCGGCGA-GCu -3'
miRNA:   3'- -CGGUG-GCa---GCCAAUgu----AGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 20111 0.67 0.87467
Target:  5'- aGCCGCCGUCucaaGGccGCAcUGGCugccguCGCg -3'
miRNA:   3'- -CGGUGGCAG----CCaaUGUaGCCGuu----GCG- -5'
23228 5' -52.9 NC_005259.1 + 41598 0.67 0.87467
Target:  5'- gGUCGCgCGUCGGUguu-UCGGau-CGCg -3'
miRNA:   3'- -CGGUG-GCAGCCAauguAGCCguuGCG- -5'
23228 5' -52.9 NC_005259.1 + 12985 0.67 0.873899
Target:  5'- cCCACCGU-GGUgcucGCGuucgcacUCGGCuACGCc -3'
miRNA:   3'- cGGUGGCAgCCAa---UGU-------AGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 49303 0.67 0.873899
Target:  5'- -aCAUCGUCGGggucCAUCaGGCGcgagaauACGCg -3'
miRNA:   3'- cgGUGGCAGCCaau-GUAG-CCGU-------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 37477 0.67 0.866848
Target:  5'- cGCCGCCGUUGGcugACccaccccCGGCGGugaGCa -3'
miRNA:   3'- -CGGUGGCAGCCaa-UGua-----GCCGUUg--CG- -5'
23228 5' -52.9 NC_005259.1 + 60153 0.67 0.866848
Target:  5'- gGCCGCCGccucagCGGccucACGggCGGCgAACGCc -3'
miRNA:   3'- -CGGUGGCa-----GCCaa--UGUa-GCCG-UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 62882 0.67 0.866848
Target:  5'- gGCCGC--UCGGU--CAUUGaGCGACGCc -3'
miRNA:   3'- -CGGUGgcAGCCAauGUAGC-CGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 34548 0.67 0.866053
Target:  5'- aGCCucagcuuGCCGUCGGggcCGaCGGCGAgGUu -3'
miRNA:   3'- -CGG-------UGGCAGCCaauGUaGCCGUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 13098 0.67 0.858787
Target:  5'- uGCCACCGacccCGGcccGC-UCGGCGgcuacgaccaGCGCa -3'
miRNA:   3'- -CGGUGGCa---GCCaa-UGuAGCCGU----------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 34025 0.67 0.858787
Target:  5'- gGCC-UCGgCGGcgUGCGUCGGC-GCGUu -3'
miRNA:   3'- -CGGuGGCaGCCa-AUGUAGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 33317 0.67 0.858787
Target:  5'- cCCGCCGUCGG------CGGUcACGCg -3'
miRNA:   3'- cGGUGGCAGCCaauguaGCCGuUGCG- -5'
23228 5' -52.9 NC_005259.1 + 11548 0.67 0.850494
Target:  5'- uGCCGCaCGUCaGGcggacaUUugAUCGGUAGCa- -3'
miRNA:   3'- -CGGUG-GCAG-CC------AAugUAGCCGUUGcg -5'
23228 5' -52.9 NC_005259.1 + 44470 0.67 0.850494
Target:  5'- uGCCGCCGcccuggcCGGgccaGUUGGUGACGUa -3'
miRNA:   3'- -CGGUGGCa------GCCaaugUAGCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.