miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23228 5' -52.9 NC_005259.1 + 11548 0.67 0.850494
Target:  5'- uGCCGCaCGUCaGGcggacaUUugAUCGGUAGCa- -3'
miRNA:   3'- -CGGUG-GCAG-CC------AAugUAGCCGUUGcg -5'
23228 5' -52.9 NC_005259.1 + 43177 0.67 0.850494
Target:  5'- aGCgCGaaGUCGGUaccgACcUCGGCGGCGa -3'
miRNA:   3'- -CG-GUggCAGCCAa---UGuAGCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 7921 0.67 0.850494
Target:  5'- uGCCGCCcUUGGUcuCGUgGGCcuucuuGCGCg -3'
miRNA:   3'- -CGGUGGcAGCCAauGUAgCCGu-----UGCG- -5'
23228 5' -52.9 NC_005259.1 + 179 0.67 0.850494
Target:  5'- aCCACCGacUCGGU--CAUCuauGGCGcgugGCGCg -3'
miRNA:   3'- cGGUGGC--AGCCAauGUAG---CCGU----UGCG- -5'
23228 5' -52.9 NC_005259.1 + 51263 0.67 0.841978
Target:  5'- gGCuCGCgGUggucaCGGUgcgcgGCAagCGGCAGCGCc -3'
miRNA:   3'- -CG-GUGgCA-----GCCAa----UGUa-GCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 68298 0.67 0.841978
Target:  5'- -aCAUCGggaUCGGgcGCGUcCGGCGACGg -3'
miRNA:   3'- cgGUGGC---AGCCaaUGUA-GCCGUUGCg -5'
23228 5' -52.9 NC_005259.1 + 47681 0.67 0.841114
Target:  5'- gGCCACCuuuugcaugcccgGUUGGaUGCG-CGGCAGUGCc -3'
miRNA:   3'- -CGGUGG-------------CAGCCaAUGUaGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 10322 0.68 0.833245
Target:  5'- cGUCAUCGggcUCGGcgACGggcUCGGCGGCaGCg -3'
miRNA:   3'- -CGGUGGC---AGCCaaUGU---AGCCGUUG-CG- -5'
23228 5' -52.9 NC_005259.1 + 13429 0.68 0.833245
Target:  5'- cGCCGCCGgggccgCGcuaggcGUgacCGUCGGCGcgGCGCu -3'
miRNA:   3'- -CGGUGGCa-----GC------CAau-GUAGCCGU--UGCG- -5'
23228 5' -52.9 NC_005259.1 + 61911 0.68 0.824306
Target:  5'- gGUCGCCgGUCGu---CGUCGGCAgcucggucucucGCGCg -3'
miRNA:   3'- -CGGUGG-CAGCcaauGUAGCCGU------------UGCG- -5'
23228 5' -52.9 NC_005259.1 + 48354 0.68 0.824306
Target:  5'- gGCgAUUGUCGa-UACGUCGGUugucGACGCg -3'
miRNA:   3'- -CGgUGGCAGCcaAUGUAGCCG----UUGCG- -5'
23228 5' -52.9 NC_005259.1 + 26801 0.68 0.823401
Target:  5'- cGCCGCCGccCGGUuggccggUACcggCGGUggUGCc -3'
miRNA:   3'- -CGGUGGCa-GCCA-------AUGua-GCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 23325 0.68 0.81517
Target:  5'- uGUCGCCGagcCGGaUUACAUCGGgcuCGAgGCu -3'
miRNA:   3'- -CGGUGGCa--GCC-AAUGUAGCC---GUUgCG- -5'
23228 5' -52.9 NC_005259.1 + 6121 0.68 0.81517
Target:  5'- gGCCGCCGcuacgCGGgcACu---GCAACGCg -3'
miRNA:   3'- -CGGUGGCa----GCCaaUGuagcCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 47235 0.68 0.796342
Target:  5'- -aCGCUGUUGGUgaACGucgaccagcgcUCGGUGACGCg -3'
miRNA:   3'- cgGUGGCAGCCAa-UGU-----------AGCCGUUGCG- -5'
23228 5' -52.9 NC_005259.1 + 50272 0.68 0.796342
Target:  5'- cGCUGUCGUCGGUggcgggaACGUCGuGCA-CGCu -3'
miRNA:   3'- -CGGUGGCAGCCAa------UGUAGC-CGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 56272 0.68 0.786672
Target:  5'- cGCCGCCGccCGGcccgUAUCGGCAccaGCa -3'
miRNA:   3'- -CGGUGGCa-GCCaau-GUAGCCGUug-CG- -5'
23228 5' -52.9 NC_005259.1 + 67208 0.68 0.786672
Target:  5'- cGCCGCUGUCGGcgGgGUcgaugccgaccaCGGCggUGUa -3'
miRNA:   3'- -CGGUGGCAGCCaaUgUA------------GCCGuuGCG- -5'
23228 5' -52.9 NC_005259.1 + 58862 0.68 0.786672
Target:  5'- gGCuCGCCGUCGucgucGUcGCcUCGGCAuCGCc -3'
miRNA:   3'- -CG-GUGGCAGC-----CAaUGuAGCCGUuGCG- -5'
23228 5' -52.9 NC_005259.1 + 52620 0.69 0.776845
Target:  5'- gGCCAacuaCGUCGaGcUGCGUCGGCugugGgGCg -3'
miRNA:   3'- -CGGUg---GCAGC-CaAUGUAGCCGu---UgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.