miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 3' -57.3 NC_005259.1 + 59154 0.66 0.645548
Target:  5'- --gGUGCCGGGgAGCugcuCAGGGCgcuuauacaUGGCg -3'
miRNA:   3'- uuaUACGGCCCgUCGc---GUUCUG---------GCCG- -5'
23230 3' -57.3 NC_005259.1 + 4450 0.7 0.382078
Target:  5'- --cGUGCgagUGGGCAGCGUAuGGGCCaaGGCc -3'
miRNA:   3'- uuaUACG---GCCCGUCGCGU-UCUGG--CCG- -5'
23230 3' -57.3 NC_005259.1 + 3332 0.7 0.390927
Target:  5'- ----cGCCGGGCAGCucuGCGuGcUCGGCa -3'
miRNA:   3'- uuauaCGGCCCGUCG---CGUuCuGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 58574 0.7 0.390927
Target:  5'- ----gGCCGGaucGCGGCGCGgcugccGGGCCGGa -3'
miRNA:   3'- uuauaCGGCC---CGUCGCGU------UCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 65346 0.7 0.406273
Target:  5'- -cUGUGCgCGGGCAcGuCGCAGGucaagaaauacgccACCGGUa -3'
miRNA:   3'- uuAUACG-GCCCGU-C-GCGUUC--------------UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 4273 0.69 0.417331
Target:  5'- ------aCGGGCGGCuGCGcugccacgagcacGGACCGGCg -3'
miRNA:   3'- uuauacgGCCCGUCG-CGU-------------UCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 67428 0.69 0.418261
Target:  5'- --gGUGCCGGGCucacgcuugAGCGCGucggGGAugcccuuuUCGGCg -3'
miRNA:   3'- uuaUACGGCCCG---------UCGCGU----UCU--------GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 2152 0.69 0.427627
Target:  5'- --gGUGCUGGccaGCGGCGuCGAGccGCCGGUu -3'
miRNA:   3'- uuaUACGGCC---CGUCGC-GUUC--UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 13282 0.69 0.427627
Target:  5'- cAUAUGUCGGGCaAGUauugacgugaGCcAGugCGGCg -3'
miRNA:   3'- uUAUACGGCCCG-UCG----------CGuUCugGCCG- -5'
23230 3' -57.3 NC_005259.1 + 43784 0.7 0.373364
Target:  5'- ----cGCCGGGCaugagcAGCGCGGGcACCGaGUc -3'
miRNA:   3'- uuauaCGGCCCG------UCGCGUUC-UGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 17772 0.71 0.359704
Target:  5'- ----cGCCGGGCcgagcgcaccgAGCGUgcgcaccgcgauagcGAGGCCGGUg -3'
miRNA:   3'- uuauaCGGCCCG-----------UCGCG---------------UUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 28975 0.73 0.27202
Target:  5'- --gGUGCCGaGGCcgcgAGCGCccgcuacggccacGAGAUCGGCg -3'
miRNA:   3'- uuaUACGGC-CCG----UCGCG-------------UUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 52270 0.82 0.068212
Target:  5'- ----gGCCGGGCAGa-CAGGACCGGCc -3'
miRNA:   3'- uuauaCGGCCCGUCgcGUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 45633 0.79 0.098506
Target:  5'- ----gGCCGGGCAGCGC---GCCGGUg -3'
miRNA:   3'- uuauaCGGCCCGUCGCGuucUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 44549 0.79 0.098506
Target:  5'- --cAUGCCGagaccggcaGGCAGCGCGccGACCGGCa -3'
miRNA:   3'- uuaUACGGC---------CCGUCGCGUu-CUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 49554 0.77 0.141199
Target:  5'- --aGUGCCGGGCuGUucgucggucgugGCcAGACCGGCg -3'
miRNA:   3'- uuaUACGGCCCGuCG------------CGuUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 42550 0.74 0.228155
Target:  5'- --gGUGgCGGGCAGCucgGCGAGcaGCCGGUc -3'
miRNA:   3'- uuaUACgGCCCGUCG---CGUUC--UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 40665 0.74 0.233518
Target:  5'- ----cGCCGaGCAGCGCGAGcgccuuggugcucACCGGCc -3'
miRNA:   3'- uuauaCGGCcCGUCGCGUUC-------------UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 20993 0.74 0.233518
Target:  5'- cGUGUGggccuacUCGGGCGGCGacccuGACCGGCa -3'
miRNA:   3'- uUAUAC-------GGCCCGUCGCguu--CUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 60281 0.73 0.259303
Target:  5'- ---cUGCCGGGCGGC-CAucgucgucGGugCGGCc -3'
miRNA:   3'- uuauACGGCCCGUCGcGU--------UCugGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.