miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 3' -57.3 NC_005259.1 + 952 0.67 0.580552
Target:  5'- ----aGUCGGGCAgcucGCGCAAcGGCucaaCGGCg -3'
miRNA:   3'- uuauaCGGCCCGU----CGCGUU-CUG----GCCG- -5'
23230 3' -57.3 NC_005259.1 + 1233 0.67 0.59133
Target:  5'- ------aCGaGGaCGGCuGCAAGACCGGCc -3'
miRNA:   3'- uuauacgGC-CC-GUCG-CGUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 2011 0.67 0.59133
Target:  5'- ----gGCCaucGGGUGGCGC---ACCGGCa -3'
miRNA:   3'- uuauaCGG---CCCGUCGCGuucUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 2152 0.69 0.427627
Target:  5'- --gGUGCUGGccaGCGGCGuCGAGccGCCGGUu -3'
miRNA:   3'- uuaUACGGCC---CGUCGC-GUUC--UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 3332 0.7 0.390927
Target:  5'- ----cGCCGGGCAGCucuGCGuGcUCGGCa -3'
miRNA:   3'- uuauaCGGCCCGUCG---CGUuCuGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 3693 0.68 0.476237
Target:  5'- ----cGCCGccCAGCuuGAGACCGGCg -3'
miRNA:   3'- uuauaCGGCccGUCGcgUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 4273 0.69 0.417331
Target:  5'- ------aCGGGCGGCuGCGcugccacgagcacGGACCGGCg -3'
miRNA:   3'- uuauacgGCCCGUCG-CGU-------------UCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 4450 0.7 0.382078
Target:  5'- --cGUGCgagUGGGCAGCGUAuGGGCCaaGGCc -3'
miRNA:   3'- uuaUACG---GCCCGUCGCGU-UCUGG--CCG- -5'
23230 3' -57.3 NC_005259.1 + 4615 0.67 0.569815
Target:  5'- ---cUGUCGGGCcgguGGCGCGAGuuCUGGa -3'
miRNA:   3'- uuauACGGCCCG----UCGCGUUCu-GGCCg -5'
23230 3' -57.3 NC_005259.1 + 4766 0.67 0.569815
Target:  5'- ----gGCCGGGCucaAGCagauccgcaacgGCGAGGCCaGGUa -3'
miRNA:   3'- uuauaCGGCCCG---UCG------------CGUUCUGG-CCG- -5'
23230 3' -57.3 NC_005259.1 + 5706 0.68 0.527437
Target:  5'- --cGUGCCGccaaGGcCAGCGCcGGACggCGGCc -3'
miRNA:   3'- uuaUACGGC----CC-GUCGCGuUCUG--GCCG- -5'
23230 3' -57.3 NC_005259.1 + 7441 0.67 0.580552
Target:  5'- ----cGCCGcauGGCAGCGCcGAGGauGGCu -3'
miRNA:   3'- uuauaCGGC---CCGUCGCG-UUCUggCCG- -5'
23230 3' -57.3 NC_005259.1 + 9044 0.66 0.602141
Target:  5'- cAUGUGCgGGGCGGUa----ACCGGCu -3'
miRNA:   3'- uUAUACGgCCCGUCGcguucUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 13211 0.67 0.559128
Target:  5'- ----aGCgGGGcCAGCGguGggccucGACCGGCc -3'
miRNA:   3'- uuauaCGgCCC-GUCGCguU------CUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 13282 0.69 0.427627
Target:  5'- cAUAUGUCGGGCaAGUauugacgugaGCcAGugCGGCg -3'
miRNA:   3'- uUAUACGGCCCG-UCG----------CGuUCugGCCG- -5'
23230 3' -57.3 NC_005259.1 + 14209 0.66 0.633605
Target:  5'- ----gGCCGGGaucaacuaccCGGCGCGcgucgugcguaucGGGCCGGg -3'
miRNA:   3'- uuauaCGGCCC----------GUCGCGU-------------UCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 14542 0.69 0.427627
Target:  5'- --gGUGCCGaguucguccGGCAGgccgaGCgGGGACCGGCg -3'
miRNA:   3'- uuaUACGGC---------CCGUCg----CG-UUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 17171 0.67 0.590251
Target:  5'- ----aGCUGacgacaaGGCGGCGCAGGaaGCCGcGCg -3'
miRNA:   3'- uuauaCGGC-------CCGUCGCGUUC--UGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 17772 0.71 0.359704
Target:  5'- ----cGCCGGGCcgagcgcaccgAGCGUgcgcaccgcgauagcGAGGCCGGUg -3'
miRNA:   3'- uuauaCGGCCCG-----------UCGCG---------------UUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 20993 0.74 0.233518
Target:  5'- cGUGUGggccuacUCGGGCGGCGacccuGACCGGCa -3'
miRNA:   3'- uUAUAC-------GGCCCGUCGCguu--CUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.