miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 3' -57.3 NC_005259.1 + 68797 0.66 0.612978
Target:  5'- ----cGCCgGGGCGGUGUcGGugcCCGGUa -3'
miRNA:   3'- uuauaCGG-CCCGUCGCGuUCu--GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 68703 0.66 0.634691
Target:  5'- ----aGgCGGGCAGCGCG---UCGGUg -3'
miRNA:   3'- uuauaCgGCCCGUCGCGUucuGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 67428 0.69 0.418261
Target:  5'- --gGUGCCGGGCucacgcuugAGCGCGucggGGAugcccuuuUCGGCg -3'
miRNA:   3'- uuaUACGGCCCG---------UCGCGU----UCU--------GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 66935 0.67 0.559128
Target:  5'- ----cGaCCGGGguGaGCGGGAcaCCGGCg -3'
miRNA:   3'- uuauaC-GGCCCguCgCGUUCU--GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 65346 0.7 0.406273
Target:  5'- -cUGUGCgCGGGCAcGuCGCAGGucaagaaauacgccACCGGUa -3'
miRNA:   3'- uuAUACG-GCCCGU-C-GCGUUC--------------UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 65175 0.67 0.580552
Target:  5'- ----cGCCGGGUcaaGGCGCuggucgaucAGAuCCGGUg -3'
miRNA:   3'- uuauaCGGCCCG---UCGCGu--------UCU-GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 64021 0.67 0.580552
Target:  5'- ----cGcCCGaGGC-GCgGCGAGGCCGGUg -3'
miRNA:   3'- uuauaC-GGC-CCGuCG-CGUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 63425 0.67 0.568744
Target:  5'- --cAUGCCGaGCAGCcgcucggGCGAGACaucgaGGCc -3'
miRNA:   3'- uuaUACGGCcCGUCG-------CGUUCUGg----CCG- -5'
23230 3' -57.3 NC_005259.1 + 61595 0.66 0.601059
Target:  5'- cGGUggGCCggugGGGuCGGCGgGgaacagcAGACCGGCa -3'
miRNA:   3'- -UUAuaCGG----CCC-GUCGCgU-------UCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 61065 0.67 0.559128
Target:  5'- -uUGUGCCGGGCaucggcauaGGCGUcgucGGCCucgGGCu -3'
miRNA:   3'- uuAUACGGCCCG---------UCGCGuu--CUGG---CCG- -5'
23230 3' -57.3 NC_005259.1 + 60738 0.67 0.580552
Target:  5'- --cGUGUCGGgguccauuuGCAGUGCAGucGGCuCGGCg -3'
miRNA:   3'- uuaUACGGCC---------CGUCGCGUU--CUG-GCCG- -5'
23230 3' -57.3 NC_005259.1 + 60386 0.68 0.506685
Target:  5'- ----cGCCGGaCAGCgGCGAGGCgaGGCc -3'
miRNA:   3'- uuauaCGGCCcGUCG-CGUUCUGg-CCG- -5'
23230 3' -57.3 NC_005259.1 + 60281 0.73 0.259303
Target:  5'- ---cUGCCGGGCGGC-CAucgucgucGGugCGGCc -3'
miRNA:   3'- uuauACGGCCCGUCGcGU--------UCugGCCG- -5'
23230 3' -57.3 NC_005259.1 + 59154 0.66 0.645548
Target:  5'- --gGUGCCGGGgAGCugcuCAGGGCgcuuauacaUGGCg -3'
miRNA:   3'- uuaUACGGCCCgUCGc---GUUCUG---------GCCG- -5'
23230 3' -57.3 NC_005259.1 + 58574 0.7 0.390927
Target:  5'- ----gGCCGGaucGCGGCGCGgcugccGGGCCGGa -3'
miRNA:   3'- uuauaCGGCC---CGUCGCGU------UCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 55101 0.66 0.634691
Target:  5'- ---cUGCCGauGGCGGCGaaaaauGcACCGGCu -3'
miRNA:   3'- uuauACGGC--CCGUCGCguu---C-UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 54517 0.67 0.59133
Target:  5'- --gAUGUgGGGUGGCGgguCGAGuauCCGGCc -3'
miRNA:   3'- uuaUACGgCCCGUCGC---GUUCu--GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 53552 0.66 0.602141
Target:  5'- uGUcgGCuCGGGCGGUGCGAu-CCGaGUa -3'
miRNA:   3'- uUAuaCG-GCCCGUCGCGUUcuGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 52888 0.66 0.634691
Target:  5'- -----cUCGGGC-GCGCGAGuACgGGCa -3'
miRNA:   3'- uuauacGGCCCGuCGCGUUC-UGgCCG- -5'
23230 3' -57.3 NC_005259.1 + 52270 0.82 0.068212
Target:  5'- ----gGCCGGGCAGa-CAGGACCGGCc -3'
miRNA:   3'- uuauaCGGCCCGUCgcGUUCUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.