miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 3' -57.3 NC_005259.1 + 23245 0.67 0.565534
Target:  5'- --aAUGCCaccucguGGGCGGUGgccaccaugagcacCAAGACCGGg -3'
miRNA:   3'- uuaUACGG-------CCCGUCGC--------------GUUCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 24238 0.69 0.437117
Target:  5'- ----gGCCGaGGCA-CGCGAGuuCGGCg -3'
miRNA:   3'- uuauaCGGC-CCGUcGCGUUCugGCCG- -5'
23230 3' -57.3 NC_005259.1 + 26832 0.67 0.537932
Target:  5'- --gGUGCCgGGGCGGUcugcucggGCAGGauGCCGaGCu -3'
miRNA:   3'- uuaUACGG-CCCGUCG--------CGUUC--UGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 28326 0.69 0.427627
Target:  5'- cGGUGUGCCGuccuuGGCGGCGaaauCGAGGCCacGGUg -3'
miRNA:   3'- -UUAUACGGC-----CCGUCGC----GUUCUGG--CCG- -5'
23230 3' -57.3 NC_005259.1 + 28975 0.73 0.27202
Target:  5'- --gGUGCCGaGGCcgcgAGCGCccgcuacggccacGAGAUCGGCg -3'
miRNA:   3'- uuaUACGGC-CCG----UCGCG-------------UUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 32696 0.66 0.634691
Target:  5'- ----aGCCGGGCGGUgGUucGuacACUGGCa -3'
miRNA:   3'- uuauaCGGCCCGUCG-CGuuC---UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 33989 0.67 0.548498
Target:  5'- ----aGCCGGGUAuGCGgUGAGcugcaACCGGCu -3'
miRNA:   3'- uuauaCGGCCCGU-CGC-GUUC-----UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 34115 0.66 0.612978
Target:  5'- cGUGUcGCCGGGCGcgaGCAcGuCCGGUa -3'
miRNA:   3'- uUAUA-CGGCCCGUcg-CGUuCuGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 34876 0.68 0.486288
Target:  5'- --gGUGCCggaccGGGguGCcucggGCAGGACgGGCc -3'
miRNA:   3'- uuaUACGG-----CCCguCG-----CGUUCUGgCCG- -5'
23230 3' -57.3 NC_005259.1 + 36223 0.67 0.59133
Target:  5'- --gAUGCCGagcaccuuGGcCAGCGCGAGcGCCuGCg -3'
miRNA:   3'- uuaUACGGC--------CC-GUCGCGUUC-UGGcCG- -5'
23230 3' -57.3 NC_005259.1 + 40665 0.74 0.233518
Target:  5'- ----cGCCGaGCAGCGCGAGcgccuuggugcucACCGGCc -3'
miRNA:   3'- uuauaCGGCcCGUCGCGUUC-------------UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 42550 0.74 0.228155
Target:  5'- --gGUGgCGGGCAGCucgGCGAGcaGCCGGUc -3'
miRNA:   3'- uuaUACgGCCCGUCG---CGUUC--UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 43784 0.7 0.373364
Target:  5'- ----cGCCGGGCaugagcAGCGCGGGcACCGaGUc -3'
miRNA:   3'- uuauaCGGCCCG------UCGCGUUC-UGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 44411 0.68 0.517019
Target:  5'- --gGUGCCcgccugaccGGCAGCGCcGAuACCGGCc -3'
miRNA:   3'- uuaUACGGc--------CCGUCGCG-UUcUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 44482 0.67 0.580552
Target:  5'- ----gGCCGGGCcaguuGGUGacguAGACCGGg -3'
miRNA:   3'- uuauaCGGCCCG-----UCGCgu--UCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 44549 0.79 0.098506
Target:  5'- --cAUGCCGagaccggcaGGCAGCGCGccGACCGGCa -3'
miRNA:   3'- uuaUACGGC---------CCGUCGCGUu-CUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 44677 0.66 0.623831
Target:  5'- ----cGuuGGGCAGCGU--GGCCcGCa -3'
miRNA:   3'- uuauaCggCCCGUCGCGuuCUGGcCG- -5'
23230 3' -57.3 NC_005259.1 + 44851 0.68 0.486288
Target:  5'- ----cGCCcGaGCAGuCGCucAGACCGGCg -3'
miRNA:   3'- uuauaCGGcC-CGUC-GCGu-UCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 45184 0.69 0.437117
Target:  5'- ----cGCCGaGGuCAGCGCGGugauGACgGGCg -3'
miRNA:   3'- uuauaCGGC-CC-GUCGCGUU----CUGgCCG- -5'
23230 3' -57.3 NC_005259.1 + 45633 0.79 0.098506
Target:  5'- ----gGCCGGGCAGCGC---GCCGGUg -3'
miRNA:   3'- uuauaCGGCCCGUCGCGuucUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.