miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 3' -57.3 NC_005259.1 + 26832 0.67 0.537932
Target:  5'- --gGUGCCgGGGCGGUcugcucggGCAGGauGCCGaGCu -3'
miRNA:   3'- uuaUACGG-CCCGUCG--------CGUUC--UGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 4615 0.67 0.569815
Target:  5'- ---cUGUCGGGCcgguGGCGCGAGuuCUGGa -3'
miRNA:   3'- uuauACGGCCCG----UCGCGUUCu-GGCCg -5'
23230 3' -57.3 NC_005259.1 + 63425 0.67 0.568744
Target:  5'- --cAUGCCGaGCAGCcgcucggGCGAGACaucgaGGCc -3'
miRNA:   3'- uuaUACGGCcCGUCG-------CGUUCUGg----CCG- -5'
23230 3' -57.3 NC_005259.1 + 1233 0.67 0.59133
Target:  5'- ------aCGaGGaCGGCuGCAAGACCGGCc -3'
miRNA:   3'- uuauacgGC-CC-GUCG-CGUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 4766 0.67 0.569815
Target:  5'- ----gGCCGGGCucaAGCagauccgcaacgGCGAGGCCaGGUa -3'
miRNA:   3'- uuauaCGGCCCG---UCG------------CGUUCUGG-CCG- -5'
23230 3' -57.3 NC_005259.1 + 952 0.67 0.580552
Target:  5'- ----aGUCGGGCAgcucGCGCAAcGGCucaaCGGCg -3'
miRNA:   3'- uuauaCGGCCCGU----CGCGUU-CUG----GCCG- -5'
23230 3' -57.3 NC_005259.1 + 44482 0.67 0.580552
Target:  5'- ----gGCCGGGCcaguuGGUGacguAGACCGGg -3'
miRNA:   3'- uuauaCGGCCCG-----UCGCgu--UCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 7441 0.67 0.580552
Target:  5'- ----cGCCGcauGGCAGCGCcGAGGauGGCu -3'
miRNA:   3'- uuauaCGGC---CCGUCGCG-UUCUggCCG- -5'
23230 3' -57.3 NC_005259.1 + 65175 0.67 0.580552
Target:  5'- ----cGCCGGGUcaaGGCGCuggucgaucAGAuCCGGUg -3'
miRNA:   3'- uuauaCGGCCCG---UCGCGu--------UCU-GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 64021 0.67 0.580552
Target:  5'- ----cGcCCGaGGC-GCgGCGAGGCCGGUg -3'
miRNA:   3'- uuauaC-GGC-CCGuCG-CGUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 17171 0.67 0.590251
Target:  5'- ----aGCUGacgacaaGGCGGCGCAGGaaGCCGcGCg -3'
miRNA:   3'- uuauaCGGC-------CCGUCGCGUUC--UGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 60738 0.67 0.580552
Target:  5'- --cGUGUCGGgguccauuuGCAGUGCAGucGGCuCGGCg -3'
miRNA:   3'- uuaUACGGCC---------CGUCGCGUU--CUG-GCCG- -5'
23230 3' -57.3 NC_005259.1 + 2011 0.67 0.59133
Target:  5'- ----gGCCaucGGGUGGCGC---ACCGGCa -3'
miRNA:   3'- uuauaCGG---CCCGUCGCGuucUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 36223 0.67 0.59133
Target:  5'- --gAUGCCGagcaccuuGGcCAGCGCGAGcGCCuGCg -3'
miRNA:   3'- uuaUACGGC--------CC-GUCGCGUUC-UGGcCG- -5'
23230 3' -57.3 NC_005259.1 + 54517 0.67 0.59133
Target:  5'- --gAUGUgGGGUGGCGgguCGAGuauCCGGCc -3'
miRNA:   3'- uuaUACGgCCCGUCGC---GUUCu--GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 5706 0.68 0.527437
Target:  5'- --cGUGCCGccaaGGcCAGCGCcGGACggCGGCc -3'
miRNA:   3'- uuaUACGGC----CC-GUCGCGuUCUG--GCCG- -5'
23230 3' -57.3 NC_005259.1 + 44411 0.68 0.517019
Target:  5'- --gGUGCCcgccugaccGGCAGCGCcGAuACCGGCc -3'
miRNA:   3'- uuaUACGGc--------CCGUCGCG-UUcUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 60386 0.68 0.506685
Target:  5'- ----cGCCGGaCAGCgGCGAGGCgaGGCc -3'
miRNA:   3'- uuauaCGGCCcGUCG-CGUUCUGg-CCG- -5'
23230 3' -57.3 NC_005259.1 + 44851 0.68 0.486288
Target:  5'- ----cGCCcGaGCAGuCGCucAGACCGGCg -3'
miRNA:   3'- uuauaCGGcC-CGUC-GCGu-UCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 34876 0.68 0.486288
Target:  5'- --gGUGCCggaccGGGguGCcucggGCAGGACgGGCc -3'
miRNA:   3'- uuaUACGG-----CCCguCG-----CGUUCUGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.