miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 3' -57.3 NC_005259.1 + 13282 0.69 0.427627
Target:  5'- cAUAUGUCGGGCaAGUauugacgugaGCcAGugCGGCg -3'
miRNA:   3'- uUAUACGGCCCG-UCG----------CGuUCugGCCG- -5'
23230 3' -57.3 NC_005259.1 + 2152 0.69 0.427627
Target:  5'- --gGUGCUGGccaGCGGCGuCGAGccGCCGGUu -3'
miRNA:   3'- uuaUACGGCC---CGUCGC-GUUC--UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 24238 0.69 0.437117
Target:  5'- ----gGCCGaGGCA-CGCGAGuuCGGCg -3'
miRNA:   3'- uuauaCGGC-CCGUcGCGUUCugGCCG- -5'
23230 3' -57.3 NC_005259.1 + 45184 0.69 0.437117
Target:  5'- ----cGCCGaGGuCAGCGCGGugauGACgGGCg -3'
miRNA:   3'- uuauaCGGC-CC-GUCGCGUU----CUGgCCG- -5'
23230 3' -57.3 NC_005259.1 + 3693 0.68 0.476237
Target:  5'- ----cGCCGccCAGCuuGAGACCGGCg -3'
miRNA:   3'- uuauaCGGCccGUCGcgUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 44851 0.68 0.486288
Target:  5'- ----cGCCcGaGCAGuCGCucAGACCGGCg -3'
miRNA:   3'- uuauaCGGcC-CGUC-GCGu-UCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 34876 0.68 0.486288
Target:  5'- --gGUGCCggaccGGGguGCcucggGCAGGACgGGCc -3'
miRNA:   3'- uuaUACGG-----CCCguCG-----CGUUCUGgCCG- -5'
23230 3' -57.3 NC_005259.1 + 60386 0.68 0.506685
Target:  5'- ----cGCCGGaCAGCgGCGAGGCgaGGCc -3'
miRNA:   3'- uuauaCGGCCcGUCG-CGUUCUGg-CCG- -5'
23230 3' -57.3 NC_005259.1 + 44411 0.68 0.517019
Target:  5'- --gGUGCCcgccugaccGGCAGCGCcGAuACCGGCc -3'
miRNA:   3'- uuaUACGGc--------CCGUCGCG-UUcUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 51545 0.68 0.527437
Target:  5'- ----gGCCGGGCaAGUGCAcgacguugGGGCCaacgauccGGCa -3'
miRNA:   3'- uuauaCGGCCCG-UCGCGU--------UCUGG--------CCG- -5'
23230 3' -57.3 NC_005259.1 + 5706 0.68 0.527437
Target:  5'- --cGUGCCGccaaGGcCAGCGCcGGACggCGGCc -3'
miRNA:   3'- uuaUACGGC----CC-GUCGCGuUCUG--GCCG- -5'
23230 3' -57.3 NC_005259.1 + 47299 0.68 0.531626
Target:  5'- ----cGCCGGaCAGCGaccccuuggccuGACCGGCg -3'
miRNA:   3'- uuauaCGGCCcGUCGCguu---------CUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 26832 0.67 0.537932
Target:  5'- --gGUGCCgGGGCGGUcugcucggGCAGGauGCCGaGCu -3'
miRNA:   3'- uuaUACGG-CCCGUCG--------CGUUC--UGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 52166 0.67 0.537932
Target:  5'- ----cGCCGaGGCGcucauGCaGCAGGACCGcGCc -3'
miRNA:   3'- uuauaCGGC-CCGU-----CG-CGUUCUGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 33989 0.67 0.548498
Target:  5'- ----aGCCGGGUAuGCGgUGAGcugcaACCGGCu -3'
miRNA:   3'- uuauaCGGCCCGU-CGC-GUUC-----UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 66935 0.67 0.559128
Target:  5'- ----cGaCCGGGguGaGCGGGAcaCCGGCg -3'
miRNA:   3'- uuauaC-GGCCCguCgCGUUCU--GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 61065 0.67 0.559128
Target:  5'- -uUGUGCCGGGCaucggcauaGGCGUcgucGGCCucgGGCu -3'
miRNA:   3'- uuAUACGGCCCG---------UCGCGuu--CUGG---CCG- -5'
23230 3' -57.3 NC_005259.1 + 13211 0.67 0.559128
Target:  5'- ----aGCgGGGcCAGCGguGggccucGACCGGCc -3'
miRNA:   3'- uuauaCGgCCC-GUCGCguU------CUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 23245 0.67 0.565534
Target:  5'- --aAUGCCaccucguGGGCGGUGgccaccaugagcacCAAGACCGGg -3'
miRNA:   3'- uuaUACGG-------CCCGUCGC--------------GUUCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 63425 0.67 0.568744
Target:  5'- --cAUGCCGaGCAGCcgcucggGCGAGACaucgaGGCc -3'
miRNA:   3'- uuaUACGGCcCGUCG-------CGUUCUGg----CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.