miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 3' -57.3 NC_005259.1 + 64021 0.67 0.580552
Target:  5'- ----cGcCCGaGGC-GCgGCGAGGCCGGUg -3'
miRNA:   3'- uuauaC-GGC-CCGuCG-CGUUCUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 65175 0.67 0.580552
Target:  5'- ----cGCCGGGUcaaGGCGCuggucgaucAGAuCCGGUg -3'
miRNA:   3'- uuauaCGGCCCG---UCGCGu--------UCU-GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 7441 0.67 0.580552
Target:  5'- ----cGCCGcauGGCAGCGCcGAGGauGGCu -3'
miRNA:   3'- uuauaCGGC---CCGUCGCG-UUCUggCCG- -5'
23230 3' -57.3 NC_005259.1 + 44482 0.67 0.580552
Target:  5'- ----gGCCGGGCcaguuGGUGacguAGACCGGg -3'
miRNA:   3'- uuauaCGGCCCG-----UCGCgu--UCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 952 0.67 0.580552
Target:  5'- ----aGUCGGGCAgcucGCGCAAcGGCucaaCGGCg -3'
miRNA:   3'- uuauaCGGCCCGU----CGCGUU-CUG----GCCG- -5'
23230 3' -57.3 NC_005259.1 + 4766 0.67 0.569815
Target:  5'- ----gGCCGGGCucaAGCagauccgcaacgGCGAGGCCaGGUa -3'
miRNA:   3'- uuauaCGGCCCG---UCG------------CGUUCUGG-CCG- -5'
23230 3' -57.3 NC_005259.1 + 4615 0.67 0.569815
Target:  5'- ---cUGUCGGGCcgguGGCGCGAGuuCUGGa -3'
miRNA:   3'- uuauACGGCCCG----UCGCGUUCu-GGCCg -5'
23230 3' -57.3 NC_005259.1 + 63425 0.67 0.568744
Target:  5'- --cAUGCCGaGCAGCcgcucggGCGAGACaucgaGGCc -3'
miRNA:   3'- uuaUACGGCcCGUCG-------CGUUCUGg----CCG- -5'
23230 3' -57.3 NC_005259.1 + 23245 0.67 0.565534
Target:  5'- --aAUGCCaccucguGGGCGGUGgccaccaugagcacCAAGACCGGg -3'
miRNA:   3'- uuaUACGG-------CCCGUCGC--------------GUUCUGGCCg -5'
23230 3' -57.3 NC_005259.1 + 66935 0.67 0.559128
Target:  5'- ----cGaCCGGGguGaGCGGGAcaCCGGCg -3'
miRNA:   3'- uuauaC-GGCCCguCgCGUUCU--GGCCG- -5'
23230 3' -57.3 NC_005259.1 + 61065 0.67 0.559128
Target:  5'- -uUGUGCCGGGCaucggcauaGGCGUcgucGGCCucgGGCu -3'
miRNA:   3'- uuAUACGGCCCG---------UCGCGuu--CUGG---CCG- -5'
23230 3' -57.3 NC_005259.1 + 13211 0.67 0.559128
Target:  5'- ----aGCgGGGcCAGCGguGggccucGACCGGCc -3'
miRNA:   3'- uuauaCGgCCC-GUCGCguU------CUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 33989 0.67 0.548498
Target:  5'- ----aGCCGGGUAuGCGgUGAGcugcaACCGGCu -3'
miRNA:   3'- uuauaCGGCCCGU-CGC-GUUC-----UGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 26832 0.67 0.537932
Target:  5'- --gGUGCCgGGGCGGUcugcucggGCAGGauGCCGaGCu -3'
miRNA:   3'- uuaUACGG-CCCGUCG--------CGUUC--UGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 52166 0.67 0.537932
Target:  5'- ----cGCCGaGGCGcucauGCaGCAGGACCGcGCc -3'
miRNA:   3'- uuauaCGGC-CCGU-----CG-CGUUCUGGC-CG- -5'
23230 3' -57.3 NC_005259.1 + 47299 0.68 0.531626
Target:  5'- ----cGCCGGaCAGCGaccccuuggccuGACCGGCg -3'
miRNA:   3'- uuauaCGGCCcGUCGCguu---------CUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 51545 0.68 0.527437
Target:  5'- ----gGCCGGGCaAGUGCAcgacguugGGGCCaacgauccGGCa -3'
miRNA:   3'- uuauaCGGCCCG-UCGCGU--------UCUGG--------CCG- -5'
23230 3' -57.3 NC_005259.1 + 5706 0.68 0.527437
Target:  5'- --cGUGCCGccaaGGcCAGCGCcGGACggCGGCc -3'
miRNA:   3'- uuaUACGGC----CC-GUCGCGuUCUG--GCCG- -5'
23230 3' -57.3 NC_005259.1 + 44411 0.68 0.517019
Target:  5'- --gGUGCCcgccugaccGGCAGCGCcGAuACCGGCc -3'
miRNA:   3'- uuaUACGGc--------CCGUCGCG-UUcUGGCCG- -5'
23230 3' -57.3 NC_005259.1 + 60386 0.68 0.506685
Target:  5'- ----cGCCGGaCAGCgGCGAGGCgaGGCc -3'
miRNA:   3'- uuauaCGGCCcGUCG-CGUUCUGg-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.