Results 61 - 80 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 66221 | 0.68 | 0.629968 |
Target: 5'- cGCGCCGaCGCacaCGCGGUcGUgcaGCCAUCg -3' miRNA: 3'- -CGUGGC-GCGg--GUGCUA-CAac-UGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 20261 | 0.68 | 0.629968 |
Target: 5'- aCGCCGCGCCgGgcCGAUGgaucgUGgacgcGCUACCg -3' miRNA: 3'- cGUGGCGCGGgU--GCUACa----AC-----UGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 17732 | 0.68 | 0.628897 |
Target: 5'- cGCACCGUGgCUgcucgacGCGAUccGUgaGGCCGCCg -3' miRNA: 3'- -CGUGGCGCgGG-------UGCUA--CAa-CUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 8574 | 0.68 | 0.627826 |
Target: 5'- aGCACCGCcaccGCCCACGcacgauccGGCgGCCu -3' miRNA: 3'- -CGUGGCG----CGGGUGCuacaa---CUGgUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 55831 | 0.69 | 0.619262 |
Target: 5'- cCGCCGCGUCCuCGAcgcgUGUgGACUgaACCg -3' miRNA: 3'- cGUGGCGCGGGuGCU----ACAaCUGG--UGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 26969 | 0.69 | 0.619262 |
Target: 5'- aGCGCCGUGCCgaacucgGCGGUGUaGACguUCg -3' miRNA: 3'- -CGUGGCGCGGg------UGCUACAaCUGguGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 8142 | 0.69 | 0.619262 |
Target: 5'- uGCcCCGCGCCCuCGuUGcucUGGCCAUg -3' miRNA: 3'- -CGuGGCGCGGGuGCuACa--ACUGGUGg -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 14723 | 0.69 | 0.619262 |
Target: 5'- aCGCCGCGCUCGucgccgaGAUGUacgcgcUGGCCggGCCg -3' miRNA: 3'- cGUGGCGCGGGUg------CUACA------ACUGG--UGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 44377 | 0.69 | 0.612844 |
Target: 5'- uCGCCacacCGCCCAUGAUGUcgccgagcacgucggUGcCCGCCu -3' miRNA: 3'- cGUGGc---GCGGGUGCUACA---------------ACuGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 42223 | 0.69 | 0.608568 |
Target: 5'- cGCGCCGcCGUCCcCGGccaucucGACCACCu -3' miRNA: 3'- -CGUGGC-GCGGGuGCUacaa---CUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 35692 | 0.69 | 0.608568 |
Target: 5'- aCGCCGUGCCCGgCGAgggGUcgcUGAcgagguauCCGCCc -3' miRNA: 3'- cGUGGCGCGGGU-GCUa--CA---ACU--------GGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 18870 | 0.69 | 0.608568 |
Target: 5'- gGUugCGCGCgugggaggccaaCCACGAUGUcGACC-UCg -3' miRNA: 3'- -CGugGCGCG------------GGUGCUACAaCUGGuGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 35474 | 0.69 | 0.607499 |
Target: 5'- aGCACCGCccgguagGCCgaACGAUccuggGUUGGCC-CCg -3' miRNA: 3'- -CGUGGCG-------CGGg-UGCUA-----CAACUGGuGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 51719 | 0.69 | 0.597893 |
Target: 5'- -gACCGgacaagGCCCAC-AUGaUGGCCACCg -3' miRNA: 3'- cgUGGCg-----CGGGUGcUACaACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 19232 | 0.69 | 0.597893 |
Target: 5'- aCACCGaGUCgGCGAUGaucgaUGGCCGCCn -3' miRNA: 3'- cGUGGCgCGGgUGCUACa----ACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 3092 | 0.69 | 0.597893 |
Target: 5'- -aGCCGCGCa-GCGAUGagcgGGCgGCCa -3' miRNA: 3'- cgUGGCGCGggUGCUACaa--CUGgUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 55227 | 0.69 | 0.596826 |
Target: 5'- aGCAUCGUguucgauGCCCACGAccuaUGUcggGGuCCACCc -3' miRNA: 3'- -CGUGGCG-------CGGGUGCU----ACAa--CU-GGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 47927 | 0.69 | 0.5915 |
Target: 5'- uCGCCGagGCCCuggaagccgaugacgGCGGUGccgaUGGCCGCCg -3' miRNA: 3'- cGUGGCg-CGGG---------------UGCUACa---ACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 26170 | 0.69 | 0.587245 |
Target: 5'- uGC-CCGCGUCCuguGCGAucuccagaaUGUgcggcagcaUGGCCGCCg -3' miRNA: 3'- -CGuGGCGCGGG---UGCU---------ACA---------ACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 41676 | 0.69 | 0.576632 |
Target: 5'- uGCACCGCGU--GCG----UGGCCACCg -3' miRNA: 3'- -CGUGGCGCGggUGCuacaACUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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