miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 42494 0.67 0.693909
Target:  5'- -aGCCGUGaCCCguccgGCGGUG-UGGCCAgCa -3'
miRNA:   3'- cgUGGCGC-GGG-----UGCUACaACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 37164 0.67 0.693909
Target:  5'- cCGCCGCGCCCGcCGAc----GCCGCg -3'
miRNA:   3'- cGUGGCGCGGGU-GCUacaacUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 45662 0.67 0.693909
Target:  5'- aCACCGcCGUCCGCGuaGU--ACCGCCu -3'
miRNA:   3'- cGUGGC-GCGGGUGCuaCAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 3978 0.67 0.693909
Target:  5'- aGCGgucCCGCGagcaCGCGAUGgcgGGCCGCg -3'
miRNA:   3'- -CGU---GGCGCgg--GUGCUACaa-CUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 53180 0.67 0.693909
Target:  5'- cCACCGcCGCCCgucGCGGUGUccccGGCgAUCa -3'
miRNA:   3'- cGUGGC-GCGGG---UGCUACAa---CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 24475 0.67 0.692854
Target:  5'- -gACCGgagagcuCGUCCucgGCGAUGUcaaGACCACCa -3'
miRNA:   3'- cgUGGC-------GCGGG---UGCUACAa--CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 36995 0.68 0.683335
Target:  5'- cGCACCGUucuuGCCCGCGc----GcCCGCCg -3'
miRNA:   3'- -CGUGGCG----CGGGUGCuacaaCuGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 31569 0.68 0.672714
Target:  5'- uGCACCGCGCCU--GAUcGUc-GCCAUCa -3'
miRNA:   3'- -CGUGGCGCGGGugCUA-CAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 3197 0.68 0.672714
Target:  5'- ---gCGCGCaCCACGAUGUggGGCC-UCa -3'
miRNA:   3'- cgugGCGCG-GGUGCUACAa-CUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 44733 0.68 0.672714
Target:  5'- gGCAgCGCGCCCuCGAccgcgccgaggcUcUUGAgCACCg -3'
miRNA:   3'- -CGUgGCGCGGGuGCU------------AcAACUgGUGG- -5'
23230 5' -55.7 NC_005259.1 + 55426 0.68 0.662057
Target:  5'- aGCACCGagccgacgaCGCCgACGAacgcGUacagGGCCACCc -3'
miRNA:   3'- -CGUGGC---------GCGGgUGCUa---CAa---CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 45300 0.68 0.662057
Target:  5'- uUACCGCGCCgGUGAcGccgaGGCCGCCg -3'
miRNA:   3'- cGUGGCGCGGgUGCUaCaa--CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 3620 0.68 0.662057
Target:  5'- cUACCGCaacgGCUCGCuGAgc-UGACCACCa -3'
miRNA:   3'- cGUGGCG----CGGGUG-CUacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 43654 0.68 0.662057
Target:  5'- --uCUGCGCCgACGGUGUcguUGccgaucacACCGCCg -3'
miRNA:   3'- cguGGCGCGGgUGCUACA---AC--------UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 46799 0.68 0.657787
Target:  5'- aCACCGaGCCUGCGAgcgcaccaccGGCCACCu -3'
miRNA:   3'- cGUGGCgCGGGUGCUacaa------CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 415 0.68 0.651375
Target:  5'- aGCG-CGUGCCCGuCGAgGaUGACgCACCg -3'
miRNA:   3'- -CGUgGCGCGGGU-GCUaCaACUG-GUGG- -5'
23230 5' -55.7 NC_005259.1 + 40558 0.68 0.644956
Target:  5'- -gACgCGCGCCCgcGCGGUGUUGcugucggcggcucgcACCAgCa -3'
miRNA:   3'- cgUG-GCGCGGG--UGCUACAAC---------------UGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 48398 0.68 0.640675
Target:  5'- cCGCCGaCGCCCGCcgucGAgucaccgcGACCGCCa -3'
miRNA:   3'- cGUGGC-GCGGGUG----CUacaa----CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 67968 0.68 0.640675
Target:  5'- uGUAgCGCGCgCAgCGgcG-UGGCCACCg -3'
miRNA:   3'- -CGUgGCGCGgGU-GCuaCaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 52601 0.68 0.640675
Target:  5'- aGCACCaGCGCCgUACGGUGgccaACUACg -3'
miRNA:   3'- -CGUGG-CGCGG-GUGCUACaac-UGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.