miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 37509 0.66 0.765762
Target:  5'- aGCACgaUGCuGCCCgACGAgaagaucGUcgGGCCGCCg -3'
miRNA:   3'- -CGUG--GCG-CGGG-UGCUa------CAa-CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 720 0.66 0.765762
Target:  5'- gGCAUCGCGagaaucacaCCgGCGGUGccuacGCCGCCg -3'
miRNA:   3'- -CGUGGCGC---------GGgUGCUACaac--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 43260 0.66 0.765762
Target:  5'- cGCGCCggGUGCCUGaGA-GUUGACCGCn -3'
miRNA:   3'- -CGUGG--CGCGGGUgCUaCAACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 57742 0.66 0.755803
Target:  5'- cGUACUGCaa-CGCGAUGUUGcgaGCCGCg -3'
miRNA:   3'- -CGUGGCGcggGUGCUACAAC---UGGUGg -5'
23230 5' -55.7 NC_005259.1 + 32187 0.66 0.755803
Target:  5'- cGCugCGCGCCUcggucuGCGAc-UUGGCCucagacACCg -3'
miRNA:   3'- -CGugGCGCGGG------UGCUacAACUGG------UGG- -5'
23230 5' -55.7 NC_005259.1 + 47572 0.66 0.755803
Target:  5'- cGCGCUGCuGUCCcucgGCGGUGUUG-CCGa- -3'
miRNA:   3'- -CGUGGCG-CGGG----UGCUACAACuGGUgg -5'
23230 5' -55.7 NC_005259.1 + 3313 0.66 0.755803
Target:  5'- aGCGCUGCGUCgACG----UGAgCGCCg -3'
miRNA:   3'- -CGUGGCGCGGgUGCuacaACUgGUGG- -5'
23230 5' -55.7 NC_005259.1 + 13539 0.66 0.755803
Target:  5'- cCACCaaGCaGUUCGCGAUGUgGcCCGCCg -3'
miRNA:   3'- cGUGG--CG-CGGGUGCUACAaCuGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 66255 0.66 0.745724
Target:  5'- cGCAgCGCgGCCCGCGccgGgcGgcggcucacgccGCCACCa -3'
miRNA:   3'- -CGUgGCG-CGGGUGCua-CaaC------------UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 63145 0.66 0.745724
Target:  5'- cGCuguCCuCGCCCACGuUGagcaGCCGCCg -3'
miRNA:   3'- -CGu--GGcGCGGGUGCuACaac-UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 65407 0.66 0.745724
Target:  5'- aCACCGUcauGCUCACGGUGgccaagcGAUgGCCu -3'
miRNA:   3'- cGUGGCG---CGGGUGCUACaa-----CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 44570 0.67 0.735537
Target:  5'- cGCGCCGaccggcagGCUCAUGAUGUUcGGCaUGCCc -3'
miRNA:   3'- -CGUGGCg-------CGGGUGCUACAA-CUG-GUGG- -5'
23230 5' -55.7 NC_005259.1 + 66879 0.67 0.735537
Target:  5'- cGCACCGCGCC-ACGGc-UUGAUCGu- -3'
miRNA:   3'- -CGUGGCGCGGgUGCUacAACUGGUgg -5'
23230 5' -55.7 NC_005259.1 + 36784 0.67 0.734512
Target:  5'- cCGCCGUccugaccGCUCGCGucggcauUGUUGACCGgCg -3'
miRNA:   3'- cGUGGCG-------CGGGUGCu------ACAACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 31406 0.67 0.725251
Target:  5'- aGCACaGCGCCC-CGAgGUc-GCCGCUg -3'
miRNA:   3'- -CGUGgCGCGGGuGCUaCAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 34515 0.67 0.725251
Target:  5'- uCGCCGacauuGCgCACGAc--UGACCACCg -3'
miRNA:   3'- cGUGGCg----CGgGUGCUacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 16583 0.67 0.717998
Target:  5'- uCGCCGaggacauCGCCCGCGAggccaucggacUGUUcaacgggccgaggcaGGCCACCu -3'
miRNA:   3'- cGUGGC-------GCGGGUGCU-----------ACAA---------------CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 40851 0.67 0.714877
Target:  5'- uGCcCUGCGCCU-CGAccaUGGCCGCCc -3'
miRNA:   3'- -CGuGGCGCGGGuGCUacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 68064 0.67 0.704426
Target:  5'- aGCA-CGCGCUCAauCGAUGUgcUGAUCAgCu -3'
miRNA:   3'- -CGUgGCGCGGGU--GCUACA--ACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 37164 0.67 0.693909
Target:  5'- cCGCCGCGCCCGcCGAc----GCCGCg -3'
miRNA:   3'- cGUGGCGCGGGU-GCUacaacUGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.