miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 12135 0.7 0.566064
Target:  5'- aGCACCGgGUCUGCuuUcUUGAUCACCg -3'
miRNA:   3'- -CGUGGCgCGGGUGcuAcAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 12293 0.71 0.48787
Target:  5'- cCGCCGCGCCU-CGAUGcgGgcaaugucggugcgcACCGCCg -3'
miRNA:   3'- cGUGGCGCGGGuGCUACaaC---------------UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 13135 0.7 0.566064
Target:  5'- cGCACgGUGUUCGgcuCGAUcaUGGCCACCa -3'
miRNA:   3'- -CGUGgCGCGGGU---GCUAcaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 13539 0.66 0.755803
Target:  5'- cCACCaaGCaGUUCGCGAUGUgGcCCGCCg -3'
miRNA:   3'- cGUGG--CG-CGGGUGCUACAaCuGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 13967 0.72 0.448785
Target:  5'- gGCAucCCGagGCCCGCGAUGcUUgagaucugggacaaaGACCACCu -3'
miRNA:   3'- -CGU--GGCg-CGGGUGCUAC-AA---------------CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 14282 0.76 0.266792
Target:  5'- aCACCGCcuGCCCAaccacCGAUGUcggugcguaUGGCCGCCc -3'
miRNA:   3'- cGUGGCG--CGGGU-----GCUACA---------ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 14328 0.81 0.115087
Target:  5'- aCGCCGcCGCCCGCG-UGcgGGCCGCCg -3'
miRNA:   3'- cGUGGC-GCGGGUGCuACaaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 14723 0.69 0.619262
Target:  5'- aCGCCGCGCUCGucgccgaGAUGUacgcgcUGGCCggGCCg -3'
miRNA:   3'- cGUGGCGCGGGUg------CUACA------ACUGG--UGG- -5'
23230 5' -55.7 NC_005259.1 + 16583 0.67 0.717998
Target:  5'- uCGCCGaggacauCGCCCGCGAggccaucggacUGUUcaacgggccgaggcaGGCCACCu -3'
miRNA:   3'- cGUGGC-------GCGGGUGCU-----------ACAA---------------CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 17049 0.66 0.769709
Target:  5'- -aACCGCGaCCC-CGAggcggugcgcgcauuUGUgcgucaGGCCGCCg -3'
miRNA:   3'- cgUGGCGC-GGGuGCU---------------ACAa-----CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 17732 0.68 0.628897
Target:  5'- cGCACCGUGgCUgcucgacGCGAUccGUgaGGCCGCCg -3'
miRNA:   3'- -CGUGGCGCgGG-------UGCUA--CAa-CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 17897 0.7 0.538839
Target:  5'- cGCACCGCGCgCCgAUGcGUGUggaugcccggucugGACCGCg -3'
miRNA:   3'- -CGUGGCGCG-GG-UGC-UACAa-------------CUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 18870 0.69 0.608568
Target:  5'- gGUugCGCGCgugggaggccaaCCACGAUGUcGACC-UCg -3'
miRNA:   3'- -CGugGCGCG------------GGUGCUACAaCUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 19232 0.69 0.597893
Target:  5'- aCACCGaGUCgGCGAUGaucgaUGGCCGCCn -3'
miRNA:   3'- cGUGGCgCGGgUGCUACa----ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 19262 0.72 0.40787
Target:  5'- -uGCCGgGCCgCcCGAUGgaagucaUGACCACCa -3'
miRNA:   3'- cgUGGCgCGG-GuGCUACa------ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 19863 0.73 0.39006
Target:  5'- gGCGCuCGCGCCCGCcGg---GAUCGCCg -3'
miRNA:   3'- -CGUG-GCGCGGGUGcUacaaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 19889 0.77 0.20702
Target:  5'- aCGCCGCGCCCAaGAUGUgcGACaACCa -3'
miRNA:   3'- cGUGGCGCGGGUgCUACAa-CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 20169 0.69 0.575573
Target:  5'- cCACCGCGCCCgccgccucggcugACGA----GAUCGCCg -3'
miRNA:   3'- cGUGGCGCGGG-------------UGCUacaaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 20261 0.68 0.629968
Target:  5'- aCGCCGCGCCgGgcCGAUGgaucgUGgacgcGCUACCg -3'
miRNA:   3'- cGUGGCGCGGgU--GCUACa----AC-----UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 22176 0.75 0.304514
Target:  5'- aCAgCGCGCCCAucgUGGUugcgaccuugcagacGUUGGCCACCg -3'
miRNA:   3'- cGUgGCGCGGGU---GCUA---------------CAACUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.