miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 415 0.68 0.651375
Target:  5'- aGCG-CGUGCCCGuCGAgGaUGACgCACCg -3'
miRNA:   3'- -CGUgGCGCGGGU-GCUaCaACUG-GUGG- -5'
23230 5' -55.7 NC_005259.1 + 720 0.66 0.765762
Target:  5'- gGCAUCGCGagaaucacaCCgGCGGUGccuacGCCGCCg -3'
miRNA:   3'- -CGUGGCGC---------GGgUGCUACaac--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 3092 0.69 0.597893
Target:  5'- -aGCCGCGCa-GCGAUGagcgGGCgGCCa -3'
miRNA:   3'- cgUGGCGCGggUGCUACaa--CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 3197 0.68 0.672714
Target:  5'- ---gCGCGCaCCACGAUGUggGGCC-UCa -3'
miRNA:   3'- cgugGCGCG-GGUGCUACAa-CUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 3313 0.66 0.755803
Target:  5'- aGCGCUGCGUCgACG----UGAgCGCCg -3'
miRNA:   3'- -CGUGGCGCGGgUGCuacaACUgGUGG- -5'
23230 5' -55.7 NC_005259.1 + 3620 0.68 0.662057
Target:  5'- cUACCGCaacgGCUCGCuGAgc-UGACCACCa -3'
miRNA:   3'- cGUGGCG----CGGGUG-CUacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 3978 0.67 0.693909
Target:  5'- aGCGgucCCGCGagcaCGCGAUGgcgGGCCGCg -3'
miRNA:   3'- -CGU---GGCGCgg--GUGCUACaa-CUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 4423 0.7 0.555546
Target:  5'- cCACCGCGCgCC-CGAgGUcGAgCCGCCc -3'
miRNA:   3'- cGUGGCGCG-GGuGCUaCAaCU-GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 4652 0.78 0.186544
Target:  5'- cGCACCGCGCCuacgggCACGGUGUcugcacUGGCUcggGCCg -3'
miRNA:   3'- -CGUGGCGCGG------GUGCUACA------ACUGG---UGG- -5'
23230 5' -55.7 NC_005259.1 + 5517 0.77 0.223627
Target:  5'- cGCGCCGCGCCCGCaagcugUGGCUGCUc -3'
miRNA:   3'- -CGUGGCGCGGGUGcuaca-ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 7946 0.73 0.39006
Target:  5'- cUugCGCGCCCACGGcUGcUUGGuggcccacgcCCACCg -3'
miRNA:   3'- cGugGCGCGGGUGCU-AC-AACU----------GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 8142 0.69 0.619262
Target:  5'- uGCcCCGCGCCCuCGuUGcucUGGCCAUg -3'
miRNA:   3'- -CGuGGCGCGGGuGCuACa--ACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 8384 0.66 0.794817
Target:  5'- gGCAUCGgcgagaGCCUcgGCGAgccgGGCCACCu -3'
miRNA:   3'- -CGUGGCg-----CGGG--UGCUacaaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 8481 0.79 0.172378
Target:  5'- aGCACCGCGCUgucggCACuGAUGgUGugCACCa -3'
miRNA:   3'- -CGUGGCGCGG-----GUG-CUACaACugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 8574 0.68 0.627826
Target:  5'- aGCACCGCcaccGCCCACGcacgauccGGCgGCCu -3'
miRNA:   3'- -CGUGGCG----CGGGUGCuacaa---CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 8819 0.71 0.474001
Target:  5'- cGCGCCGgGCCgGUGA-GUUGACgCGCUg -3'
miRNA:   3'- -CGUGGCgCGGgUGCUaCAACUG-GUGG- -5'
23230 5' -55.7 NC_005259.1 + 9397 0.74 0.31645
Target:  5'- cGCACgCGCGCCC-CGGUacggGugCGCCa -3'
miRNA:   3'- -CGUG-GCGCGGGuGCUAcaa-CugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 9711 0.66 0.769709
Target:  5'- gGCACCGUccucgggccggucgaGCUCGcCGAUGUUccggucauCCACCa -3'
miRNA:   3'- -CGUGGCG---------------CGGGU-GCUACAAcu------GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 9822 0.66 0.791972
Target:  5'- cGCACCGCcgggugcggcgcugGCCCAauCGAcaUUGACCAg- -3'
miRNA:   3'- -CGUGGCG--------------CGGGU--GCUacAACUGGUgg -5'
23230 5' -55.7 NC_005259.1 + 11859 0.7 0.555546
Target:  5'- cCACC-CGUCgGCGAacgUGACCGCCg -3'
miRNA:   3'- cGUGGcGCGGgUGCUacaACUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.