Results 1 - 20 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23230 | 5' | -55.7 | NC_005259.1 | + | 27416 | 0.66 | 0.765762 |
Target: 5'- aGCuCgGUGCCCGCGAggaaUUGGCuCACg -3' miRNA: 3'- -CGuGgCGCGGGUGCUac--AACUG-GUGg -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 40470 | 0.66 | 0.765762 |
Target: 5'- cGUACUGCcgGgCCGCGcgGUUGACguuggaCACCc -3' miRNA: 3'- -CGUGGCG--CgGGUGCuaCAACUG------GUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 45401 | 0.66 | 0.794817 |
Target: 5'- uCGCCGcCGagCGCGcUGaUGGCCGCCg -3' miRNA: 3'- cGUGGC-GCggGUGCuACaACUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 42141 | 0.66 | 0.775591 |
Target: 5'- cGUACguCGCGCCCGCGuug--GugCACg -3' miRNA: 3'- -CGUG--GCGCGGGUGCuacaaCugGUGg -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 65407 | 0.66 | 0.745724 |
Target: 5'- aCACCGUcauGCUCACGGUGgccaagcGAUgGCCu -3' miRNA: 3'- cGUGGCG---CGGGUGCUACaa-----CUGgUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 17049 | 0.66 | 0.769709 |
Target: 5'- -aACCGCGaCCC-CGAggcggugcgcgcauuUGUgcgucaGGCCGCCg -3' miRNA: 3'- cgUGGCGC-GGGuGCU---------------ACAa-----CUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 52164 | 0.66 | 0.775591 |
Target: 5'- aGCGCCgagGCGCUCAUGcagcagGACCGCg -3' miRNA: 3'- -CGUGG---CGCGGGUGCuacaa-CUGGUGg -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 57742 | 0.66 | 0.755803 |
Target: 5'- cGUACUGCaa-CGCGAUGUUGcgaGCCGCg -3' miRNA: 3'- -CGUGGCGcggGUGCUACAAC---UGGUGg -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 13539 | 0.66 | 0.755803 |
Target: 5'- cCACCaaGCaGUUCGCGAUGUgGcCCGCCg -3' miRNA: 3'- cGUGG--CG-CGGGUGCUACAaCuGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 34621 | 0.66 | 0.775591 |
Target: 5'- cGCGauGUGCCagACGAUGggcgcgGACCACa -3' miRNA: 3'- -CGUggCGCGGg-UGCUACaa----CUGGUGg -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 37509 | 0.66 | 0.765762 |
Target: 5'- aGCACgaUGCuGCCCgACGAgaagaucGUcgGGCCGCCg -3' miRNA: 3'- -CGUG--GCG-CGGG-UGCUa------CAa-CUGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 32187 | 0.66 | 0.755803 |
Target: 5'- cGCugCGCGCCUcggucuGCGAc-UUGGCCucagacACCg -3' miRNA: 3'- -CGugGCGCGGG------UGCUacAACUGG------UGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 720 | 0.66 | 0.765762 |
Target: 5'- gGCAUCGCGagaaucacaCCgGCGGUGccuacGCCGCCg -3' miRNA: 3'- -CGUGGCGC---------GGgUGCUACaac--UGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 27860 | 0.66 | 0.775591 |
Target: 5'- cGCGCCGUacgaccGCCCucuUGGg--UGugCACCa -3' miRNA: 3'- -CGUGGCG------CGGGu--GCUacaACugGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 47572 | 0.66 | 0.755803 |
Target: 5'- cGCGCUGCuGUCCcucgGCGGUGUUG-CCGa- -3' miRNA: 3'- -CGUGGCG-CGGG----UGCUACAACuGGUgg -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 9711 | 0.66 | 0.769709 |
Target: 5'- gGCACCGUccucgggccggucgaGCUCGcCGAUGUUccggucauCCACCa -3' miRNA: 3'- -CGUGGCG---------------CGGGU-GCUACAAcu------GGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 50129 | 0.66 | 0.765762 |
Target: 5'- gGCACCGC-CacaCGCGAUugGUUGGCgAUCc -3' miRNA: 3'- -CGUGGCGcGg--GUGCUA--CAACUGgUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 63145 | 0.66 | 0.745724 |
Target: 5'- cGCuguCCuCGCCCACGuUGagcaGCCGCCg -3' miRNA: 3'- -CGu--GGcGCGGGUGCuACaac-UGGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 3313 | 0.66 | 0.755803 |
Target: 5'- aGCGCUGCGUCgACG----UGAgCGCCg -3' miRNA: 3'- -CGUGGCGCGGgUGCuacaACUgGUGG- -5' |
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23230 | 5' | -55.7 | NC_005259.1 | + | 66255 | 0.66 | 0.745724 |
Target: 5'- cGCAgCGCgGCCCGCGccgGgcGgcggcucacgccGCCACCa -3' miRNA: 3'- -CGUgGCG-CGGGUGCua-CaaC------------UGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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