miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 37652 0.66 0.785279
Target:  5'- cGCACCGcCGCCgC-CGccgGU--GCCGCCa -3'
miRNA:   3'- -CGUGGC-GCGG-GuGCua-CAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 9822 0.66 0.791972
Target:  5'- cGCACCGCcgggugcggcgcugGCCCAauCGAcaUUGACCAg- -3'
miRNA:   3'- -CGUGGCG--------------CGGGU--GCUacAACUGGUgg -5'
23230 5' -55.7 NC_005259.1 + 40470 0.66 0.765762
Target:  5'- cGUACUGCcgGgCCGCGcgGUUGACguuggaCACCc -3'
miRNA:   3'- -CGUGGCG--CgGGUGCuaCAACUG------GUGG- -5'
23230 5' -55.7 NC_005259.1 + 52536 0.66 0.793871
Target:  5'- -gGCCGCGCCCcaagauuggauguGCGAgcccgacaugGUcGACCggACCg -3'
miRNA:   3'- cgUGGCGCGGG-------------UGCUa---------CAaCUGG--UGG- -5'
23230 5' -55.7 NC_005259.1 + 3313 0.66 0.755803
Target:  5'- aGCGCUGCGUCgACG----UGAgCGCCg -3'
miRNA:   3'- -CGUGGCGCGGgUGCuacaACUgGUGG- -5'
23230 5' -55.7 NC_005259.1 + 24135 0.66 0.779484
Target:  5'- cCGCCGcCGCCCugcucgccgaguugcGCGAUGUcuacGCCaACCa -3'
miRNA:   3'- cGUGGC-GCGGG---------------UGCUACAac--UGG-UGG- -5'
23230 5' -55.7 NC_005259.1 + 45401 0.66 0.794817
Target:  5'- uCGCCGcCGagCGCGcUGaUGGCCGCCg -3'
miRNA:   3'- cGUGGC-GCggGUGCuACaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 34621 0.66 0.775591
Target:  5'- cGCGauGUGCCagACGAUGggcgcgGACCACa -3'
miRNA:   3'- -CGUggCGCGGg-UGCUACaa----CUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 47572 0.66 0.755803
Target:  5'- cGCGCUGCuGUCCcucgGCGGUGUUG-CCGa- -3'
miRNA:   3'- -CGUGGCG-CGGG----UGCUACAACuGGUgg -5'
23230 5' -55.7 NC_005259.1 + 63145 0.66 0.745724
Target:  5'- cGCuguCCuCGCCCACGuUGagcaGCCGCCg -3'
miRNA:   3'- -CGu--GGcGCGGGUGCuACaac-UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 27860 0.66 0.775591
Target:  5'- cGCGCCGUacgaccGCCCucuUGGg--UGugCACCa -3'
miRNA:   3'- -CGUGGCG------CGGGu--GCUacaACugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 40851 0.67 0.714877
Target:  5'- uGCcCUGCGCCU-CGAccaUGGCCGCCc -3'
miRNA:   3'- -CGuGGCGCGGGuGCUacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 36784 0.67 0.734512
Target:  5'- cCGCCGUccugaccGCUCGCGucggcauUGUUGACCGgCg -3'
miRNA:   3'- cGUGGCG-------CGGGUGCu------ACAACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 42494 0.67 0.693909
Target:  5'- -aGCCGUGaCCCguccgGCGGUG-UGGCCAgCa -3'
miRNA:   3'- cgUGGCGC-GGG-----UGCUACaACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 31406 0.67 0.725251
Target:  5'- aGCACaGCGCCC-CGAgGUc-GCCGCUg -3'
miRNA:   3'- -CGUGgCGCGGGuGCUaCAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 53180 0.67 0.693909
Target:  5'- cCACCGcCGCCCgucGCGGUGUccccGGCgAUCa -3'
miRNA:   3'- cGUGGC-GCGGG---UGCUACAa---CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 37164 0.67 0.693909
Target:  5'- cCGCCGCGCCCGcCGAc----GCCGCg -3'
miRNA:   3'- cGUGGCGCGGGU-GCUacaacUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 30524 0.67 0.693909
Target:  5'- aGCucuuuaGCGCCCugcAUGAUcaUGGCCACCg -3'
miRNA:   3'- -CGugg---CGCGGG---UGCUAcaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 24475 0.67 0.692854
Target:  5'- -gACCGgagagcuCGUCCucgGCGAUGUcaaGACCACCa -3'
miRNA:   3'- cgUGGC-------GCGGG---UGCUACAa--CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 34515 0.67 0.725251
Target:  5'- uCGCCGacauuGCgCACGAc--UGACCACCg -3'
miRNA:   3'- cGUGGCg----CGgGUGCUacaACUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.