miRNA display CGI


Results 21 - 40 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 64755 0.75 0.294355
Target:  5'- cCACCGCGCCuCGCGAcg--GugCGCCu -3'
miRNA:   3'- cGUGGCGCGG-GUGCUacaaCugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 22457 0.75 0.294355
Target:  5'- gGCuACCucguGCGCCCGCGcgGUcUGACCGuCCg -3'
miRNA:   3'- -CG-UGG----CGCGGGUGCuaCA-ACUGGU-GG- -5'
23230 5' -55.7 NC_005259.1 + 64636 0.75 0.301584
Target:  5'- aGCGCCcaccaaucgaGCGUCCACGAguauUUGAUCACCc -3'
miRNA:   3'- -CGUGG----------CGCGGGUGCUac--AACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 22176 0.75 0.304514
Target:  5'- aCAgCGCGCCCAucgUGGUugcgaccuugcagacGUUGGCCACCg -3'
miRNA:   3'- cGUgGCGCGGGU---GCUA---------------CAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 43933 0.75 0.305987
Target:  5'- aCACCGCGCUacugacagcgucgGCGAUGggcggGGCCGCCg -3'
miRNA:   3'- cGUGGCGCGGg------------UGCUACaa---CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 43287 0.75 0.308949
Target:  5'- aGCGCCcgccgccgacGCGCCCGCcuGAauggcugcGUUGGCCACCg -3'
miRNA:   3'- -CGUGG----------CGCGGGUG--CUa-------CAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 31825 0.75 0.311933
Target:  5'- cCACCGCGCCCGCGucgaucuucucgcGcgUGACCGCg -3'
miRNA:   3'- cGUGGCGCGGGUGCua-----------Ca-ACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 9397 0.74 0.31645
Target:  5'- cGCACgCGCGCCC-CGGUacggGugCGCCa -3'
miRNA:   3'- -CGUG-GCGCGGGuGCUAcaa-CugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 52215 0.74 0.324088
Target:  5'- gGCACCGCGuUCCGCGcccGcUGAUCACCc -3'
miRNA:   3'- -CGUGGCGC-GGGUGCua-CaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 49638 0.73 0.356001
Target:  5'- gGCAgCCGCGUCgGCGAUGgcGGCCucgauacgcGCCu -3'
miRNA:   3'- -CGU-GGCGCGGgUGCUACaaCUGG---------UGG- -5'
23230 5' -55.7 NC_005259.1 + 60814 0.73 0.39006
Target:  5'- -gGCCGgaaauCGUCgGCGAUGcUGGCCACCa -3'
miRNA:   3'- cgUGGC-----GCGGgUGCUACaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 19863 0.73 0.39006
Target:  5'- gGCGCuCGCGCCCGCcGg---GAUCGCCg -3'
miRNA:   3'- -CGUG-GCGCGGGUGcUacaaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 7946 0.73 0.39006
Target:  5'- cUugCGCGCCCACGGcUGcUUGGuggcccacgcCCACCg -3'
miRNA:   3'- cGugGCGCGGGUGCU-AC-AACU----------GGUGG- -5'
23230 5' -55.7 NC_005259.1 + 46342 0.73 0.398902
Target:  5'- cGCACCGCuuguagguucugGgCCGCGAUGgc-ACCGCCc -3'
miRNA:   3'- -CGUGGCG------------CgGGUGCUACaacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 19262 0.72 0.40787
Target:  5'- -uGCCGgGCCgCcCGAUGgaagucaUGACCACCa -3'
miRNA:   3'- cgUGGCgCGG-GuGCUACa------ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 39877 0.72 0.40787
Target:  5'- -aGCUGCGCCCAcacCGAaucGUUGucGCCGCCg -3'
miRNA:   3'- cgUGGCGCGGGU---GCUa--CAAC--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 38852 0.72 0.411493
Target:  5'- aGCGCguucucgauguucgaCGCGCCCgcaaugGCGGUGUUGACgACg -3'
miRNA:   3'- -CGUG---------------GCGCGGG------UGCUACAACUGgUGg -5'
23230 5' -55.7 NC_005259.1 + 29996 0.72 0.416964
Target:  5'- cGCACgGUGgucaCCACGAcaaggUGACCACCg -3'
miRNA:   3'- -CGUGgCGCg---GGUGCUaca--ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 46560 0.72 0.416964
Target:  5'- -gACCGCGCCUAUGGUcgcggcGUcGACCGCg -3'
miRNA:   3'- cgUGGCGCGGGUGCUA------CAaCUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 42641 0.72 0.435517
Target:  5'- gGCACCuCgGCCC-CGAUGUgGGCgGCCa -3'
miRNA:   3'- -CGUGGcG-CGGGuGCUACAaCUGgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.