miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 48023 1.13 0.000772
Target:  5'- uGCACCGCGCCCACGAUGUUGACCACCc -3'
miRNA:   3'- -CGUGGCGCGGGUGCUACAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 41405 0.91 0.024292
Target:  5'- cGCGCCGCucgggguGCCCACGAUGUgcacgGGCCGCCa -3'
miRNA:   3'- -CGUGGCG-------CGGGUGCUACAa----CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 46884 0.84 0.071832
Target:  5'- cGCGCCGcCGCCCGCGAUGagcGcCCGCCg -3'
miRNA:   3'- -CGUGGC-GCGGGUGCUACaa-CuGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 37385 0.84 0.082608
Target:  5'- gGCACCGCccgccgcgccGCCCAUGGUGUUGuugacGCCGCCc -3'
miRNA:   3'- -CGUGGCG----------CGGGUGCUACAAC-----UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 45516 0.83 0.092323
Target:  5'- cCACCGCGCC---GGUGUUGGCCGCCg -3'
miRNA:   3'- cGUGGCGCGGgugCUACAACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 14328 0.81 0.115087
Target:  5'- aCGCCGcCGCCCGCG-UGcgGGCCGCCg -3'
miRNA:   3'- cGUGGC-GCGGGUGCuACaaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 38814 0.81 0.121548
Target:  5'- cGC-CCGCGCCCGCGAUGaccgagucgaUGGCCugCu -3'
miRNA:   3'- -CGuGGCGCGGGUGCUACa---------ACUGGugG- -5'
23230 5' -55.7 NC_005259.1 + 56661 0.81 0.121548
Target:  5'- gGCACCGCGCgUCACGGgcucGUUGcGCCACCc -3'
miRNA:   3'- -CGUGGCGCG-GGUGCUa---CAAC-UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 8481 0.79 0.172378
Target:  5'- aGCACCGCGCUgucggCACuGAUGgUGugCACCa -3'
miRNA:   3'- -CGUGGCGCGG-----GUG-CUACaACugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 42194 0.78 0.186544
Target:  5'- cGCugCGCGCCguCGCGAUGgaUGcCCGCCg -3'
miRNA:   3'- -CGugGCGCGG--GUGCUACa-ACuGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 4652 0.78 0.186544
Target:  5'- cGCACCGCGCCuacgggCACGGUGUcugcacUGGCUcggGCCg -3'
miRNA:   3'- -CGUGGCGCGG------GUGCUACA------ACUGG---UGG- -5'
23230 5' -55.7 NC_005259.1 + 19889 0.77 0.20702
Target:  5'- aCGCCGCGCCCAaGAUGUgcGACaACCa -3'
miRNA:   3'- cGUGGCGCGGGUgCUACAa-CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 5517 0.77 0.223627
Target:  5'- cGCGCCGCGCCCGCaagcugUGGCUGCUc -3'
miRNA:   3'- -CGUGGCGCGGGUGcuaca-ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 35199 0.76 0.247517
Target:  5'- aGCACCGUGCCgCcugaggcgGCGAggaacgUGACCGCCa -3'
miRNA:   3'- -CGUGGCGCGG-G--------UGCUaca---ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 62822 0.76 0.251277
Target:  5'- aGCGCCGCuuGCCCGCGAggucgagcgcgcgGUUGACgagcaGCCg -3'
miRNA:   3'- -CGUGGCG--CGGGUGCUa------------CAACUGg----UGG- -5'
23230 5' -55.7 NC_005259.1 + 48072 0.76 0.253811
Target:  5'- cCGCCGCGCCCugagcgAUGGUGUUGAgC-CCg -3'
miRNA:   3'- cGUGGCGCGGG------UGCUACAACUgGuGG- -5'
23230 5' -55.7 NC_005259.1 + 60487 0.76 0.260235
Target:  5'- cGCACCaGCGCCCAgcacgcgcCGGUGUUgucguaGugCGCCa -3'
miRNA:   3'- -CGUGG-CGCGGGU--------GCUACAA------CugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 46946 0.76 0.260235
Target:  5'- cGCGCCGCcgaCCGCGuugagcuUGUUGGCCACg -3'
miRNA:   3'- -CGUGGCGcg-GGUGCu------ACAACUGGUGg -5'
23230 5' -55.7 NC_005259.1 + 14282 0.76 0.266792
Target:  5'- aCACCGCcuGCCCAaccacCGAUGUcggugcguaUGGCCGCCc -3'
miRNA:   3'- cGUGGCG--CGGGU-----GCUACA---------ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 36630 0.75 0.28656
Target:  5'- cGCGCCGCccgcaagGCCCGCGAUcagcgaGCCGCCg -3'
miRNA:   3'- -CGUGGCG-------CGGGUGCUAcaac--UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.