miRNA display CGI


Results 1 - 20 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 68064 0.67 0.704426
Target:  5'- aGCA-CGCGCUCAauCGAUGUgcUGAUCAgCu -3'
miRNA:   3'- -CGUgGCGCGGGU--GCUACA--ACUGGUgG- -5'
23230 5' -55.7 NC_005259.1 + 67968 0.68 0.640675
Target:  5'- uGUAgCGCGCgCAgCGgcG-UGGCCACCg -3'
miRNA:   3'- -CGUgGCGCGgGU-GCuaCaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 67141 0.7 0.524364
Target:  5'- aGCACCGCugugaGCCgCuuguCGAUGgUGGCgGCCa -3'
miRNA:   3'- -CGUGGCG-----CGG-Gu---GCUACaACUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 66879 0.67 0.735537
Target:  5'- cGCACCGCGCC-ACGGc-UUGAUCGu- -3'
miRNA:   3'- -CGUGGCGCGGgUGCUacAACUGGUgg -5'
23230 5' -55.7 NC_005259.1 + 66255 0.66 0.745724
Target:  5'- cGCAgCGCgGCCCGCGccgGgcGgcggcucacgccGCCACCa -3'
miRNA:   3'- -CGUgGCG-CGGGUGCua-CaaC------------UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 66221 0.68 0.629968
Target:  5'- cGCGCCGaCGCacaCGCGGUcGUgcaGCCAUCg -3'
miRNA:   3'- -CGUGGC-GCGg--GUGCUA-CAac-UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 65407 0.66 0.745724
Target:  5'- aCACCGUcauGCUCACGGUGgccaagcGAUgGCCu -3'
miRNA:   3'- cGUGGCG---CGGGUGCUACaa-----CUGgUGG- -5'
23230 5' -55.7 NC_005259.1 + 64755 0.75 0.294355
Target:  5'- cCACCGCGCCuCGCGAcg--GugCGCCu -3'
miRNA:   3'- cGUGGCGCGG-GUGCUacaaCugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 64636 0.75 0.301584
Target:  5'- aGCGCCcaccaaucgaGCGUCCACGAguauUUGAUCACCc -3'
miRNA:   3'- -CGUGG----------CGCGGGUGCUac--AACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 64015 0.7 0.566064
Target:  5'- cCACCGCGCCCgaggcgcgGCGAggccggUGACCGg- -3'
miRNA:   3'- cGUGGCGCGGG--------UGCUaca---ACUGGUgg -5'
23230 5' -55.7 NC_005259.1 + 63145 0.66 0.745724
Target:  5'- cGCuguCCuCGCCCACGuUGagcaGCCGCCg -3'
miRNA:   3'- -CGu--GGcGCGGGUGCuACaac-UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 62822 0.76 0.251277
Target:  5'- aGCGCCGCuuGCCCGCGAggucgagcgcgcgGUUGACgagcaGCCg -3'
miRNA:   3'- -CGUGGCG--CGGGUGCUa------------CAACUGg----UGG- -5'
23230 5' -55.7 NC_005259.1 + 60814 0.73 0.39006
Target:  5'- -gGCCGgaaauCGUCgGCGAUGcUGGCCACCa -3'
miRNA:   3'- cgUGGC-----GCGGgUGCUACaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 60487 0.76 0.260235
Target:  5'- cGCACCaGCGCCCAgcacgcgcCGGUGUUgucguaGugCGCCa -3'
miRNA:   3'- -CGUGG-CGCGGGU--------GCUACAA------CugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 60132 0.66 0.775591
Target:  5'- -gGCCuCGUCCuGCGcgGccUUGGCCGCCg -3'
miRNA:   3'- cgUGGcGCGGG-UGCuaC--AACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 59508 0.7 0.555546
Target:  5'- uCACCGC-CCgGCGAauugcUGUUGGCCuuagcGCCg -3'
miRNA:   3'- cGUGGCGcGGgUGCU-----ACAACUGG-----UGG- -5'
23230 5' -55.7 NC_005259.1 + 59385 0.71 0.50395
Target:  5'- cGCACCGUGCCUccgcgcGCGAgcgUGACC-UCg -3'
miRNA:   3'- -CGUGGCGCGGG------UGCUacaACUGGuGG- -5'
23230 5' -55.7 NC_005259.1 + 57925 0.7 0.555546
Target:  5'- cGCgACCaGUGCCaGCGA-GUUGAgCACCg -3'
miRNA:   3'- -CG-UGG-CGCGGgUGCUaCAACUgGUGG- -5'
23230 5' -55.7 NC_005259.1 + 57742 0.66 0.755803
Target:  5'- cGUACUGCaa-CGCGAUGUUGcgaGCCGCg -3'
miRNA:   3'- -CGUGGCGcggGUGCUACAAC---UGGUGg -5'
23230 5' -55.7 NC_005259.1 + 56661 0.81 0.121548
Target:  5'- gGCACCGCGCgUCACGGgcucGUUGcGCCACCc -3'
miRNA:   3'- -CGUGGCGCG-GGUGCUa---CAAC-UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.